Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AC011195.1-201ENST00000578177 177 ntBASIC0.25□□□□□ -2.37
FOXF1Q12946 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC0.25□□□□□ -2.37
FOXF1Q12946 MIR4423-201ENST00000580922 80 ntBASIC0.25□□□□□ -2.37
FOXF1Q12946 AC011712.1-201ENST00000588959 234 ntBASIC0.25□□□□□ -2.37
FOXF1Q12946 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC0.25□□□□□ -2.37
FOXF1Q12946 AC011476.5-201ENST00000615594 130 ntBASIC0.25□□□□□ -2.37
FOXF1Q12946 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
FOXF1Q12946 AC090625.1-201ENST00000357130 210 ntBASIC0.24□□□□□ -2.37
FOXF1Q12946 MIR1-1-201ENST00000362147 71 ntBASIC0.24□□□□□ -2.37
FOXF1Q12946 RNU6-369P-201ENST00000362515 102 ntBASIC0.24□□□□□ -2.37
FOXF1Q12946 RNU6-626P-201ENST00000363354 107 ntBASIC0.24□□□□□ -2.37
FOXF1Q12946 Y_RNA.148-201ENST00000363557 117 ntBASIC0.24□□□□□ -2.37
FOXF1Q12946 RNU6-396P-201ENST00000365369 105 ntBASIC0.24□□□□□ -2.37
FOXF1Q12946 Y_RNA.537-201ENST00000384626 109 ntBASIC0.24□□□□□ -2.37
FOXF1Q12946 MIR489-201ENST00000384923 84 ntBASIC0.24□□□□□ -2.37
FOXF1Q12946 MIR573-201ENST00000384964 99 ntBASIC0.24□□□□□ -2.37
FOXF1Q12946 MTCO2P12-201ENST00000427426 682 ntBASIC0.24□□□□□ -2.37
FOXF1Q12946 AC005534.2-201ENST00000431047 433 ntBASIC0.24□□□□□ -2.37
FOXF1Q12946 Y_RNA.635-201ENST00000459041 101 ntBASIC0.24□□□□□ -2.37
FOXF1Q12946 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.24□□□□□ -2.37
FOXF1Q12946 RNU6-718P-201ENST00000516166 105 ntBASIC0.24□□□□□ -2.37
FOXF1Q12946 RNU4ATAC7P-201ENST00000516280 125 ntBASIC0.24□□□□□ -2.37
FOXF1Q12946 RNU6-155P-201ENST00000516347 100 ntBASIC0.24□□□□□ -2.37
FOXF1Q12946 RNU6-264P-201ENST00000517134 104 ntBASIC0.24□□□□□ -2.37
FOXF1Q12946 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.24□□□□□ -2.37
FOXF1Q12946 AC093027.1-201ENST00000546698 429 ntBASIC0.24□□□□□ -2.37
FOXF1Q12946 MIR548AR-201ENST00000582191 57 ntBASIC0.24□□□□□ -2.37
FOXF1Q12946 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.24□□□□□ -2.37
FOXF1Q12946 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC0.24□□□□□ -2.37
FOXF1Q12946 Y_RNA.27-201ENST00000362540 103 ntBASIC0.23□□□□□ -2.37
FOXF1Q12946 Y_RNA.203-201ENST00000364106 102 ntBASIC0.23□□□□□ -2.37
FOXF1Q12946 Y_RNA.310-201ENST00000365063 113 ntBASIC0.23□□□□□ -2.37
FOXF1Q12946 RNU6-442P-201ENST00000383968 104 ntBASIC0.23□□□□□ -2.37
FOXF1Q12946 RNU6-767P-201ENST00000384132 107 ntBASIC0.23□□□□□ -2.37
FOXF1Q12946 MIR140-201ENST00000385282 100 ntBASIC0.23□□□□□ -2.37
FOXF1Q12946 AC005042.3-201ENST00000453230 174 ntBASIC0.23□□□□□ -2.37
FOXF1Q12946 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC0.23□□□□□ -2.37
FOXF1Q12946 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.23□□□□□ -2.37
FOXF1Q12946 RN7SKP295-201ENST00000517264 153 ntBASIC0.23□□□□□ -2.37
FOXF1Q12946 MIR5188-201ENST00000583467 113 ntBASIC0.23□□□□□ -2.37
FOXF1Q12946 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC0.23□□□□□ -2.37
FOXF1Q12946 AC025253.1-201ENST00000613623 543 ntBASIC0.23□□□□□ -2.37
FOXF1Q12946 WT1-AS_8.1-201ENST00000615200 275 ntBASIC0.23□□□□□ -2.37
FOXF1Q12946 Pinc.1-201ENST00000616452 154 ntBASIC0.23□□□□□ -2.37
FOXF1Q12946 AC098679.4-201ENST00000624241 654 ntBASIC0.23□□□□□ -2.37
FOXF1Q12946 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.22□□□□□ -2.37
FOXF1Q12946 SNORD114-23-201ENST00000363536 72 ntBASIC0.22□□□□□ -2.37
FOXF1Q12946 RNU6-1188P-201ENST00000363795 107 ntBASIC0.22□□□□□ -2.37
FOXF1Q12946 RNU6-324P-201ENST00000363957 106 ntBASIC0.22□□□□□ -2.37
FOXF1Q12946 Y_RNA.279-201ENST00000364763 95 ntBASIC0.22□□□□□ -2.37
FOXF1Q12946 Y_RNA.318-201ENST00000365131 97 ntBASIC0.22□□□□□ -2.37
FOXF1Q12946 SNORA1.2-201ENST00000365189 134 ntBASIC0.22□□□□□ -2.37
FOXF1Q12946 Y_RNA.462-201ENST00000384268 102 ntBASIC0.22□□□□□ -2.37
FOXF1Q12946 SNORA2B-201ENST00000384583 137 ntBASIC0.22□□□□□ -2.37
FOXF1Q12946 Y_RNA.570-201ENST00000384750 101 ntBASIC0.22□□□□□ -2.37
FOXF1Q12946 MIR216A-201ENST00000385063 110 ntBASIC0.22□□□□□ -2.37
FOXF1Q12946 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC0.22□□□□□ -2.37
FOXF1Q12946 MIR1278-201ENST00000408753 81 ntBASIC0.22□□□□□ -2.37
FOXF1Q12946 RNA5SP222-201ENST00000411039 105 ntBASIC0.22□□□□□ -2.37
FOXF1Q12946 AC096644.2-201ENST00000429278 159 ntBASIC0.22□□□□□ -2.37
FOXF1Q12946 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.22□□□□□ -2.37
FOXF1Q12946 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.22□□□□□ -2.37
FOXF1Q12946 MTND4P17-201ENST00000470444 350 ntBASIC0.22□□□□□ -2.37
FOXF1Q12946 SNORA68.3-201ENST00000515906 83 ntBASIC0.22□□□□□ -2.37
FOXF1Q12946 RNU2-13P-201ENST00000515909 113 ntBASIC0.22□□□□□ -2.37
FOXF1Q12946 RNU7-30P-201ENST00000516835 62 ntBASIC0.22□□□□□ -2.37
FOXF1Q12946 AC127455.1-201ENST00000565496 145 ntBASIC0.22□□□□□ -2.37
FOXF1Q12946 MIR2681-201ENST00000581814 105 ntBASIC0.22□□□□□ -2.37
FOXF1Q12946 AC084782.3-201ENST00000612282 578 ntBASIC0.22□□□□□ -2.37
FOXF1Q12946 AC010205.1-201ENST00000616668 449 ntBASIC0.22□□□□□ -2.37
FOXF1Q12946 TPTEP1-208ENST00000636884 213 ntBASIC0.22□□□□□ -2.37
FOXF1Q12946 RNU6-845P-201ENST00000362578 103 ntBASIC0.21□□□□□ -2.38
FOXF1Q12946 RNU6-674P-201ENST00000363831 107 ntBASIC0.21□□□□□ -2.38
FOXF1Q12946 Y_RNA.329-201ENST00000365209 107 ntBASIC0.21□□□□□ -2.38
FOXF1Q12946 RNU6-310P-201ENST00000384655 107 ntBASIC0.21□□□□□ -2.38
FOXF1Q12946 RNU6-855P-201ENST00000410395 104 ntBASIC0.21□□□□□ -2.38
FOXF1Q12946 Y_RNA.646-201ENST00000410980 101 ntBASIC0.21□□□□□ -2.38
FOXF1Q12946 AC024067.1-201ENST00000426199 223 ntBASIC0.21□□□□□ -2.38
FOXF1Q12946 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC0.21□□□□□ -2.38
FOXF1Q12946 AC099799.1-201ENST00000439809 192 ntBASIC0.21□□□□□ -2.38
FOXF1Q12946 RNU7-169P-201ENST00000459456 61 ntBASIC0.21□□□□□ -2.38
FOXF1Q12946 AC010655.3-201ENST00000478818 450 ntBASIC0.21□□□□□ -2.38
FOXF1Q12946 AC002350.1-201ENST00000490759 375 ntBASIC0.21□□□□□ -2.38
FOXF1Q12946 RNA5SP134-201ENST00000516492 96 ntBASIC0.21□□□□□ -2.38
FOXF1Q12946 MIR4659A-201ENST00000580269 81 ntBASIC0.21□□□□□ -2.38
FOXF1Q12946 MIR5093-201ENST00000583199 100 ntBASIC0.21□□□□□ -2.38
FOXF1Q12946 MIR5690-201ENST00000583739 73 ntBASIC0.21□□□□□ -2.38
FOXF1Q12946 AC008507.4-201ENST00000585464 127 ntBASIC0.21□□□□□ -2.38
FOXF1Q12946 AC006441.5-201ENST00000612680 209 ntBASIC0.21□□□□□ -2.38
FOXF1Q12946 JPX_2.1-201ENST00000614161 69 ntBASIC0.21□□□□□ -2.38
FOXF1Q12946 U2.1-201ENST00000618978 145 ntBASIC0.21□□□□□ -2.38
FOXF1Q12946 AC138305.3-201ENST00000624988 240 ntBASIC0.21□□□□□ -2.38
FOXF1Q12946 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.2□□□□□ -2.38
FOXF1Q12946 MIRLET7D-201ENST00000362263 87 ntBASIC0.2□□□□□ -2.38
FOXF1Q12946 SNORD45.3-201ENST00000363836 72 ntBASIC0.2□□□□□ -2.38
FOXF1Q12946 RNU6-268P-201ENST00000364174 107 ntBASIC0.2□□□□□ -2.38
FOXF1Q12946 Y_RNA.341-201ENST00000365341 102 ntBASIC0.2□□□□□ -2.38
FOXF1Q12946 SNORA36.2-201ENST00000384004 127 ntBASIC0.2□□□□□ -2.38
FOXF1Q12946 SNORA51.10-201ENST00000384418 136 ntBASIC0.2□□□□□ -2.38
FOXF1Q12946 Y_RNA.494-201ENST00000384432 111 ntBASIC0.2□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms