Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 RNU6-947P-201ENST00000516264 106 ntBASIC1.22□□□□□ -2.21
LHX1P48742 Y_RNA.676-201ENST00000516393 96 ntBASIC1.22□□□□□ -2.21
LHX1P48742 SNORD45.4-201ENST00000516629 73 ntBASIC1.22□□□□□ -2.21
LHX1P48742 RNU6-1137P-201ENST00000517073 99 ntBASIC1.22□□□□□ -2.21
LHX1P48742 AC090821.2-201ENST00000523552 176 ntBASIC1.22□□□□□ -2.21
LHX1P48742 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.22□□□□□ -2.21
LHX1P48742 RNU6-806P-201ENST00000365147 105 ntBASIC1.21□□□□□ -2.22
LHX1P48742 SNORA53-201ENST00000391141 249 ntBASIC1.21□□□□□ -2.22
LHX1P48742 SNORA26.5-201ENST00000391215 123 ntBASIC1.21□□□□□ -2.22
LHX1P48742 MIR1298-201ENST00000408783 112 ntBASIC1.21□□□□□ -2.22
LHX1P48742 SNORA36B-201ENST00000410438 131 ntBASIC1.21□□□□□ -2.22
LHX1P48742 RPL21P38-201ENST00000418090 167 ntBASIC1.21□□□□□ -2.22
LHX1P48742 MTCO1P5-201ENST00000433573 344 ntBASIC1.21□□□□□ -2.22
LHX1P48742 HMGN2P32-201ENST00000444648 269 ntBASIC1.21□□□□□ -2.22
LHX1P48742 MTND4LP30-201ENST00000454092 297 ntBASIC1.21□□□□□ -2.22
LHX1P48742 AC098869.1-201ENST00000481627 292 ntBASIC1.21□□□□□ -2.22
LHX1P48742 MRPS35P2-201ENST00000508242 191 ntBASIC1.21□□□□□ -2.22
LHX1P48742 AC019288.1-201ENST00000557918 224 ntBASIC1.21□□□□□ -2.22
LHX1P48742 AL512605.2-201ENST00000592972 256 ntBASIC1.21□□□□□ -2.22
LHX1P48742 AC037487.3-201ENST00000606668 112 ntBASIC1.21□□□□□ -2.22
LHX1P48742 SNORA25.1-201ENST00000362326 128 ntBASIC1.2□□□□□ -2.22
LHX1P48742 RNA5SP327-201ENST00000362494 101 ntBASIC1.2□□□□□ -2.22
LHX1P48742 Y_RNA.64-201ENST00000362845 102 ntBASIC1.2□□□□□ -2.22
LHX1P48742 snoU2_19.2-201ENST00000363024 80 ntBASIC1.2□□□□□ -2.22
LHX1P48742 Y_RNA.153-201ENST00000363615 91 ntBASIC1.2□□□□□ -2.22
LHX1P48742 SNORD50B-201ENST00000364995 70 ntBASIC1.2□□□□□ -2.22
LHX1P48742 Y_RNA.336-201ENST00000365307 109 ntBASIC1.2□□□□□ -2.22
LHX1P48742 RNU6-514P-201ENST00000384208 107 ntBASIC1.2□□□□□ -2.22
LHX1P48742 MIR215-201ENST00000384858 110 ntBASIC1.2□□□□□ -2.22
LHX1P48742 MTCO2P33-201ENST00000402100 465 ntBASIC1.2□□□□□ -2.22
LHX1P48742 AL591704.2-201ENST00000421658 181 ntBASIC1.2□□□□□ -2.22
LHX1P48742 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.2□□□□□ -2.22
LHX1P48742 RPL39P39-201ENST00000455840 151 ntBASIC1.2□□□□□ -2.22
LHX1P48742 RNU6-437P-201ENST00000459408 95 ntBASIC1.2□□□□□ -2.22
LHX1P48742 RNU2-31P-201ENST00000516954 155 ntBASIC1.2□□□□□ -2.22
LHX1P48742 AP003733.2-201ENST00000529409 171 ntBASIC1.2□□□□□ -2.22
LHX1P48742 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC1.2□□□□□ -2.22
LHX1P48742 MIR2681-201ENST00000581814 105 ntBASIC1.2□□□□□ -2.22
LHX1P48742 MIR4295-201ENST00000585286 85 ntBASIC1.2□□□□□ -2.22
LHX1P48742 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
LHX1P48742 AC007742.2-201ENST00000618226 398 ntBASIC1.2□□□□□ -2.22
LHX1P48742 AC134026.1-201ENST00000623249 2239 ntBASIC1.19□□□□□ -2.22
LHX1P48742 RNU6-1209P-201ENST00000363655 107 ntBASIC1.19□□□□□ -2.22
LHX1P48742 RNU6-899P-201ENST00000363947 107 ntBASIC1.19□□□□□ -2.22
LHX1P48742 Y_RNA.541-201ENST00000384640 113 ntBASIC1.19□□□□□ -2.22
LHX1P48742 AC087343.1-201ENST00000477341 475 ntBASIC1.19□□□□□ -2.22
LHX1P48742 RN7SKP179-201ENST00000516126 217 ntBASIC1.19□□□□□ -2.22
LHX1P48742 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.19□□□□□ -2.22
LHX1P48742 AC005357.1-201ENST00000588399 301 ntBASIC1.19□□□□□ -2.22
LHX1P48742 Y_RNA.26-201ENST00000362539 101 ntBASIC1.18□□□□□ -2.22
LHX1P48742 RNU6-674P-201ENST00000363831 107 ntBASIC1.18□□□□□ -2.22
LHX1P48742 SNORD14E-201ENST00000364009 85 ntBASIC1.18□□□□□ -2.22
LHX1P48742 Y_RNA.796-201ENST00000364268 102 ntBASIC1.18□□□□□ -2.22
LHX1P48742 Y_RNA.799-201ENST00000364992 102 ntBASIC1.18□□□□□ -2.22
LHX1P48742 RNU6-326P-201ENST00000365480 107 ntBASIC1.18□□□□□ -2.22
LHX1P48742 RNU6-969P-201ENST00000383900 105 ntBASIC1.18□□□□□ -2.22
LHX1P48742 MIR516B2-201ENST00000385190 85 ntBASIC1.18□□□□□ -2.22
LHX1P48742 MIR136-201ENST00000385207 82 ntBASIC1.18□□□□□ -2.22
LHX1P48742 RNU6-763P-201ENST00000390865 106 ntBASIC1.18□□□□□ -2.22
LHX1P48742 AL731563.1-201ENST00000442202 214 ntBASIC1.18□□□□□ -2.22
LHX1P48742 COX6CP14-201ENST00000469580 174 ntBASIC1.18□□□□□ -2.22
LHX1P48742 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.18□□□□□ -2.22
LHX1P48742 SNORD111.1-201ENST00000516421 86 ntBASIC1.18□□□□□ -2.22
LHX1P48742 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.18□□□□□ -2.22
LHX1P48742 MIR8070-201ENST00000616510 88 ntBASIC1.18□□□□□ -2.22
LHX1P48742 SNORA25.8-201ENST00000364831 128 ntBASIC1.17□□□□□ -2.22
LHX1P48742 Y_RNA.422-201ENST00000384054 114 ntBASIC1.17□□□□□ -2.22
LHX1P48742 MIR802-201ENST00000390235 94 ntBASIC1.17□□□□□ -2.22
LHX1P48742 SNORA31.2-201ENST00000516019 134 ntBASIC1.17□□□□□ -2.22
LHX1P48742 AP003072.1-201ENST00000531740 145 ntBASIC1.17□□□□□ -2.22
LHX1P48742 AC087685.1-201ENST00000587507 141 ntBASIC1.17□□□□□ -2.22
LHX1P48742 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.17□□□□□ -2.22
LHX1P48742 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.17□□□□□ -2.22
LHX1P48742 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.16□□□□□ -2.22
LHX1P48742 MIR15B-201ENST00000385045 98 ntBASIC1.16□□□□□ -2.22
LHX1P48742 MIR1278-201ENST00000408753 81 ntBASIC1.16□□□□□ -2.22
LHX1P48742 AC048334.1-201ENST00000477975 159 ntBASIC1.16□□□□□ -2.22
LHX1P48742 AC091959.1-201ENST00000495857 238 ntBASIC1.16□□□□□ -2.22
LHX1P48742 SNORA31.4-201ENST00000516049 129 ntBASIC1.16□□□□□ -2.22
LHX1P48742 AC090142.3-201ENST00000519012 385 ntBASIC1.16□□□□□ -2.22
LHX1P48742 RPL23AP91-201ENST00000569211 455 ntBASIC1.16□□□□□ -2.22
LHX1P48742 RNU6-1205P-201ENST00000363625 106 ntBASIC1.15□□□□□ -2.23
LHX1P48742 SNORA25-201ENST00000384384 134 ntBASIC1.15□□□□□ -2.23
LHX1P48742 RNU6-1054P-201ENST00000411293 104 ntBASIC1.15□□□□□ -2.23
LHX1P48742 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.15□□□□□ -2.23
LHX1P48742 RNU6-1007P-201ENST00000516586 107 ntBASIC1.15□□□□□ -2.23
LHX1P48742 RNA5SP102-201ENST00000516865 106 ntBASIC1.15□□□□□ -2.23
LHX1P48742 SNORA70.22-201ENST00000517160 124 ntBASIC1.15□□□□□ -2.23
LHX1P48742 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
LHX1P48742 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.15□□□□□ -2.23
LHX1P48742 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.15□□□□□ -2.23
LHX1P48742 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.14□□□□□ -2.23
LHX1P48742 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.14□□□□□ -2.23
LHX1P48742 Y_RNA.84-201ENST00000363011 104 ntBASIC1.14□□□□□ -2.23
LHX1P48742 RNU6-144P-201ENST00000383951 107 ntBASIC1.14□□□□□ -2.23
LHX1P48742 RNU6-442P-201ENST00000383968 104 ntBASIC1.14□□□□□ -2.23
LHX1P48742 MIR222-201ENST00000384992 110 ntBASIC1.14□□□□□ -2.23
LHX1P48742 MIR1276-201ENST00000408707 83 ntBASIC1.14□□□□□ -2.23
LHX1P48742 AC113618.1-201ENST00000416747 285 ntBASIC1.14□□□□□ -2.23
LHX1P48742 AC245047.7-201ENST00000440265 293 ntBASIC1.14□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 165.4 ms