Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 RNU6-1205P-201ENST00000363625 106 ntBASIC1.61□□□□□ -2.15
SHMT1P34896 Y_RNA.203-201ENST00000364106 102 ntBASIC1.61□□□□□ -2.15
SHMT1P34896 Y_RNA.226-201ENST00000364337 114 ntBASIC1.61□□□□□ -2.15
SHMT1P34896 Y_RNA.452-201ENST00000384202 108 ntBASIC1.61□□□□□ -2.15
SHMT1P34896 RNU6-1289P-201ENST00000384431 106 ntBASIC1.61□□□□□ -2.15
SHMT1P34896 SNORA12.1-201ENST00000390873 148 ntBASIC1.61□□□□□ -2.15
SHMT1P34896 MIR548H3-201ENST00000408771 118 ntBASIC1.61□□□□□ -2.15
SHMT1P34896 BTF3P11-201ENST00000426582 477 ntBASIC1.61□□□□□ -2.15
SHMT1P34896 Z98949.2-201ENST00000440996 144 ntBASIC1.61□□□□□ -2.15
SHMT1P34896 RNU6-1132P-201ENST00000459214 107 ntBASIC1.61□□□□□ -2.15
SHMT1P34896 RNU6-437P-201ENST00000459408 95 ntBASIC1.61□□□□□ -2.15
SHMT1P34896 AC004223.1-201ENST00000479840 271 ntBASIC1.61□□□□□ -2.15
SHMT1P34896 HMGN1P7-201ENST00000491722 313 ntBASIC1.61□□□□□ -2.15
SHMT1P34896 Y_RNA.668-201ENST00000516233 93 ntBASIC1.61□□□□□ -2.15
SHMT1P34896 Y_RNA.714-201ENST00000517065 90 ntBASIC1.61□□□□□ -2.15
SHMT1P34896 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.61□□□□□ -2.15
SHMT1P34896 MIR5692C2-201ENST00000577959 77 ntBASIC1.61□□□□□ -2.15
SHMT1P34896 MIR4285-201ENST00000581001 85 ntBASIC1.61□□□□□ -2.15
SHMT1P34896 MIR2681-201ENST00000581814 105 ntBASIC1.61□□□□□ -2.15
SHMT1P34896 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.61□□□□□ -2.15
SHMT1P34896 AC012433.1-201ENST00000588916 398 ntBASIC1.61□□□□□ -2.15
SHMT1P34896 AL157834.3-201ENST00000615543 103 ntBASIC1.61□□□□□ -2.15
SHMT1P34896 snoU18.1-201ENST00000629629 71 ntBASIC1.61□□□□□ -2.15
SHMT1P34896 AC095038.3-201ENST00000634439 195 ntBASIC1.61□□□□□ -2.15
SHMT1P34896 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.61□□□□□ -2.15
SHMT1P34896 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.61□□□□□ -2.15
SHMT1P34896 MIR337-201ENST00000362281 93 ntBASIC1.6□□□□□ -2.15
SHMT1P34896 SNORD68-201ENST00000363214 84 ntBASIC1.6□□□□□ -2.15
SHMT1P34896 RNU6-674P-201ENST00000363831 107 ntBASIC1.6□□□□□ -2.15
SHMT1P34896 Y_RNA.193-201ENST00000363979 102 ntBASIC1.6□□□□□ -2.15
SHMT1P34896 Y_RNA.253-201ENST00000364562 112 ntBASIC1.6□□□□□ -2.15
SHMT1P34896 RNU6-740P-201ENST00000364734 105 ntBASIC1.6□□□□□ -2.15
SHMT1P34896 RNU6-702P-201ENST00000364982 107 ntBASIC1.6□□□□□ -2.15
SHMT1P34896 RNU6-53P-201ENST00000365367 106 ntBASIC1.6□□□□□ -2.15
SHMT1P34896 RPS29P29-201ENST00000456396 171 ntBASIC1.6□□□□□ -2.15
SHMT1P34896 RNA5SP168-201ENST00000516642 112 ntBASIC1.6□□□□□ -2.15
SHMT1P34896 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.6□□□□□ -2.15
SHMT1P34896 MIR3149-201ENST00000584629 83 ntBASIC1.6□□□□□ -2.15
SHMT1P34896 AC005357.1-201ENST00000588399 301 ntBASIC1.6□□□□□ -2.15
SHMT1P34896 AL591926.4-201ENST00000616895 298 ntBASIC1.6□□□□□ -2.15
SHMT1P34896 AP000648.3-201ENST00000623539 4507 ntBASIC1.59□□□□□ -2.15
SHMT1P34896 MIR126-201ENST00000362291 85 ntBASIC1.59□□□□□ -2.15
SHMT1P34896 Y_RNA.14-201ENST00000362415 103 ntBASIC1.59□□□□□ -2.15
SHMT1P34896 RNU6-424P-201ENST00000384367 105 ntBASIC1.59□□□□□ -2.15
SHMT1P34896 RNU2-38P-201ENST00000410856 79 ntBASIC1.59□□□□□ -2.15
SHMT1P34896 RNU1-123P-201ENST00000458950 160 ntBASIC1.59□□□□□ -2.15
SHMT1P34896 RPL39P38-201ENST00000467018 153 ntBASIC1.59□□□□□ -2.15
SHMT1P34896 MIR3660-201ENST00000584845 100 ntBASIC1.59□□□□□ -2.15
SHMT1P34896 MIR4762-201ENST00000585261 75 ntBASIC1.59□□□□□ -2.15
SHMT1P34896 AC062037.2-201ENST00000610137 73 ntBASIC1.59□□□□□ -2.15
SHMT1P34896 SNORD3E-202ENST00000627253 216 ntBASIC1.59□□□□□ -2.15
SHMT1P34896 ICE2P2-201ENST00000483823 2787 ntBASIC1.59□□□□□ -2.16
SHMT1P34896 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.58□□□□□ -2.16
SHMT1P34896 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.58□□□□□ -2.16
SHMT1P34896 Y_RNA.82-201ENST00000363000 102 ntBASIC1.58□□□□□ -2.16
SHMT1P34896 Y_RNA.92-201ENST00000363043 102 ntBASIC1.58□□□□□ -2.16
SHMT1P34896 Y_RNA.235-201ENST00000364412 102 ntBASIC1.58□□□□□ -2.16
SHMT1P34896 U8.5-201ENST00000364528 136 ntBASIC1.58□□□□□ -2.16
SHMT1P34896 Y_RNA.306-201ENST00000365015 102 ntBASIC1.58□□□□□ -2.16
SHMT1P34896 Y_RNA.312-201ENST00000365089 102 ntBASIC1.58□□□□□ -2.16
SHMT1P34896 Y_RNA.322-201ENST00000365151 102 ntBASIC1.58□□□□□ -2.16
SHMT1P34896 Y_RNA.562-201ENST00000384695 113 ntBASIC1.58□□□□□ -2.16
SHMT1P34896 MIR660-201ENST00000385235 97 ntBASIC1.58□□□□□ -2.16
SHMT1P34896 U8.16-201ENST00000391279 133 ntBASIC1.58□□□□□ -2.16
SHMT1P34896 CALM2P4-201ENST00000430810 426 ntBASIC1.58□□□□□ -2.16
SHMT1P34896 Y_RNA.650-201ENST00000459002 102 ntBASIC1.58□□□□□ -2.16
SHMT1P34896 RNA5SP61-201ENST00000516453 100 ntBASIC1.58□□□□□ -2.16
SHMT1P34896 Y_RNA.777-201ENST00000516982 102 ntBASIC1.58□□□□□ -2.16
SHMT1P34896 AC004817.2-201ENST00000561794 651 ntBASIC1.58□□□□□ -2.16
SHMT1P34896 Y_RNA.771-201ENST00000598668 102 ntBASIC1.58□□□□□ -2.16
SHMT1P34896 AL008718.3-201ENST00000610217 321 ntBASIC1.58□□□□□ -2.16
SHMT1P34896 JPX_2.1-201ENST00000614161 69 ntBASIC1.58□□□□□ -2.16
SHMT1P34896 Y_RNA.789-201ENST00000622480 102 ntBASIC1.58□□□□□ -2.16
SHMT1P34896 Y_RNA.117-201ENST00000363294 101 ntBASIC1.57□□□□□ -2.16
SHMT1P34896 Y_RNA.350-201ENST00000365409 98 ntBASIC1.57□□□□□ -2.16
SHMT1P34896 RNU6-211P-201ENST00000384047 107 ntBASIC1.57□□□□□ -2.16
SHMT1P34896 MIR522-201ENST00000385071 87 ntBASIC1.57□□□□□ -2.16
SHMT1P34896 AL603910.2-201ENST00000407268 136 ntBASIC1.57□□□□□ -2.16
SHMT1P34896 Y_RNA.590-201ENST00000410140 107 ntBASIC1.57□□□□□ -2.16
SHMT1P34896 RN7SKP51-201ENST00000410781 304 ntBASIC1.57□□□□□ -2.16
SHMT1P34896 MLLT10P1-201ENST00000418346 262 ntBASIC1.57□□□□□ -2.16
SHMT1P34896 SNRPGP10-201ENST00000432323 225 ntBASIC1.57□□□□□ -2.16
SHMT1P34896 HSPE1P24-201ENST00000450782 238 ntBASIC1.57□□□□□ -2.16
SHMT1P34896 AC005908.1-201ENST00000468701 347 ntBASIC1.57□□□□□ -2.16
SHMT1P34896 RNU7-12P-201ENST00000516030 62 ntBASIC1.57□□□□□ -2.16
SHMT1P34896 BX284668.6-201ENST00000606899 438 ntBASIC1.57□□□□□ -2.16
SHMT1P34896 AC027279.3-201ENST00000625055 122 ntBASIC1.57□□□□□ -2.16
SHMT1P34896 MIRLET7C-201ENST00000362160 84 ntBASIC1.56□□□□□ -2.16
SHMT1P34896 SNORD33-201ENST00000362761 85 ntBASIC1.56□□□□□ -2.16
SHMT1P34896 Y_RNA.54-201ENST00000362766 105 ntBASIC1.56□□□□□ -2.16
SHMT1P34896 Y_RNA.293-201ENST00000364908 93 ntBASIC1.56□□□□□ -2.16
SHMT1P34896 Y_RNA.416-201ENST00000384014 113 ntBASIC1.56□□□□□ -2.16
SHMT1P34896 Y_RNA.478-201ENST00000384358 107 ntBASIC1.56□□□□□ -2.16
SHMT1P34896 MIR513A1-201ENST00000385138 129 ntBASIC1.56□□□□□ -2.16
SHMT1P34896 RNU6-131P-201ENST00000391144 107 ntBASIC1.56□□□□□ -2.16
SHMT1P34896 CYCTP-201ENST00000504253 315 ntBASIC1.56□□□□□ -2.16
SHMT1P34896 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.56□□□□□ -2.16
SHMT1P34896 Y_RNA.679-201ENST00000516416 91 ntBASIC1.56□□□□□ -2.16
SHMT1P34896 RNU6-1007P-201ENST00000516586 107 ntBASIC1.56□□□□□ -2.16
SHMT1P34896 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms