| TFE3 | P19532 | CHST9-202 | ENST00000581714 | 2043 nt | APPRIS P1 TSL 1 (best) BASIC | 2.71 | □□□□□ -1.98 | | |
| TFE3 | P19532 | OGN-201 | ENST00000262551 | 2971 nt | APPRIS P1 TSL 5 BASIC | 2.71 | □□□□□ -1.98 | | |
| TFE3 | P19532 | RNU6-268P-201 | ENST00000364174 | 107 nt | BASIC | 2.71 | □□□□□ -1.98 | | |
| TFE3 | P19532 | TRAJ50-201 | ENST00000390487 | 60 nt | APPRIS P1 BASIC | 2.71 | □□□□□ -1.98 | | |
| TFE3 | P19532 | SNORD77.3-201 | ENST00000391113 | 65 nt | BASIC | 2.71 | □□□□□ -1.98 | | |
| TFE3 | P19532 | AL034345.1-201 | ENST00000407768 | 123 nt | BASIC | 2.71 | □□□□□ -1.98 | | |
| TFE3 | P19532 | RNA5SP270-201 | ENST00000411361 | 118 nt | BASIC | 2.71 | □□□□□ -1.98 | | |
| TFE3 | P19532 | AL136985.1-201 | ENST00000424592 | 395 nt | TSL 3 BASIC | 2.71 | □□□□□ -1.98 | | |
| TFE3 | P19532 | FAR2P3-204 | ENST00000434661 | 444 nt | TSL 2 BASIC | 2.71 | □□□□□ -1.98 | | |
| TFE3 | P19532 | CYCTP-201 | ENST00000504253 | 315 nt | BASIC | 2.71 | □□□□□ -1.98 | | |
| TFE3 | P19532 | AC010210.1-203 | ENST00000513905 | 260 nt | TSL 3 BASIC | 2.71 | □□□□□ -1.98 | | |
| TFE3 | P19532 | AC074131.1-201 | ENST00000514662 | 253 nt | TSL 2 BASIC | 2.71 | □□□□□ -1.98 | | |
| TFE3 | P19532 | RNU5E-3P-201 | ENST00000515913 | 68 nt | BASIC | 2.71 | □□□□□ -1.98 | | |
| TFE3 | P19532 | RNU6-772P-201 | ENST00000516042 | 105 nt | BASIC | 2.71 | □□□□□ -1.98 | | |
| TFE3 | P19532 | RNA5SP282-201 | ENST00000516355 | 108 nt | BASIC | 2.71 | □□□□□ -1.98 | | |
| TFE3 | P19532 | AC133485.4-201 | ENST00000561835 | 220 nt | BASIC | 2.71 | □□□□□ -1.98 | | |
| TFE3 | P19532 | AC138907.4-201 | ENST00000570107 | 226 nt | BASIC | 2.71 | □□□□□ -1.98 | | |
| TFE3 | P19532 | AL022345.2-201 | ENST00000606307 | 135 nt | BASIC | 2.71 | □□□□□ -1.98 | | |
| TFE3 | P19532 | U6.95-201 | ENST00000636931 | 70 nt | BASIC | 2.71 | □□□□□ -1.98 | | |
| TFE3 | P19532 | Clostridiales-1.3-201 | ENST00000637703 | 147 nt | BASIC | 2.71 | □□□□□ -1.98 | | |
| TFE3 | P19532 | PIK3C2G-206 | ENST00000538779 | 4963 nt | TSL 5 BASIC | 2.71 | □□□□□ -1.98 | | |
| TFE3 | P19532 | MTND5P32-201 | ENST00000560711 | 1802 nt | BASIC | 2.7 | □□□□□ -1.98 | | |
| TFE3 | P19532 | SNORA63D-201 | ENST00000364359 | 132 nt | BASIC | 2.7 | □□□□□ -1.98 | | |
| TFE3 | P19532 | RNU6-309P-201 | ENST00000364573 | 106 nt | BASIC | 2.7 | □□□□□ -1.98 | | |
| TFE3 | P19532 | RNU6-215P-201 | ENST00000365169 | 102 nt | BASIC | 2.7 | □□□□□ -1.98 | | |
| TFE3 | P19532 | SNORD20-201 | ENST00000384550 | 80 nt | BASIC | 2.7 | □□□□□ -1.98 | | |
| TFE3 | P19532 | SNORA48.1-201 | ENST00000390879 | 135 nt | BASIC | 2.7 | □□□□□ -1.98 | | |
| TFE3 | P19532 | AC027279.3-201 | ENST00000625055 | 122 nt | BASIC | 2.7 | □□□□□ -1.98 | | |
| TFE3 | P19532 | MYSM1-208 | ENST00000622766 | 6020 nt | TSL 1 (best) BASIC | 2.7 | □□□□□ -1.98 | | |
| TFE3 | P19532 | CSNK1G3-202 | ENST00000360683 | 4047 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.7 | □□□□□ -1.98 | | |
| TFE3 | P19532 | FOXP2-210 | ENST00000403559 | 6415 nt | TSL 2 BASIC | 2.69 | □□□□□ -1.98 | | |
| TFE3 | P19532 | SNORD115-28-201 | ENST00000363931 | 81 nt | BASIC | 2.69 | □□□□□ -1.98 | | |
| TFE3 | P19532 | U8.9-201 | ENST00000365667 | 134 nt | BASIC | 2.69 | □□□□□ -1.98 | | |
| TFE3 | P19532 | RNU6-163P-201 | ENST00000384396 | 106 nt | BASIC | 2.69 | □□□□□ -1.98 | | |
| TFE3 | P19532 | MIR520A-201 | ENST00000384862 | 85 nt | BASIC | 2.69 | □□□□□ -1.98 | | |
| TFE3 | P19532 | MIR887-201 | ENST00000401258 | 79 nt | BASIC | 2.69 | □□□□□ -1.98 | | |
| TFE3 | P19532 | SNRPGP14-201 | ENST00000435400 | 219 nt | BASIC | 2.69 | □□□□□ -1.98 | | |
| TFE3 | P19532 | AC131956.1-201 | ENST00000506420 | 258 nt | TSL 2 BASIC | 2.69 | □□□□□ -1.98 | | |
| TFE3 | P19532 | RNU6-113P-201 | ENST00000516653 | 101 nt | BASIC | 2.69 | □□□□□ -1.98 | | |
| TFE3 | P19532 | MIR5197-201 | ENST00000583721 | 112 nt | BASIC | 2.69 | □□□□□ -1.98 | | |
| TFE3 | P19532 | AC079466.2-201 | ENST00000585394 | 185 nt | TSL 5 BASIC | 2.69 | □□□□□ -1.98 | | |
| TFE3 | P19532 | MIR3914-2-201 | ENST00000637339 | 95 nt | BASIC | 2.69 | □□□□□ -1.98 | | |
| TFE3 | P19532 | OR4K2-204 | ENST00000641885 | 8681 nt | APPRIS P1 BASIC | 2.69 | □□□□□ -1.98 | | |
| TFE3 | P19532 | APC-201 | ENST00000257430 | 10701 nt | APPRIS P1 TSL 5 BASIC | 2.69 | □□□□□ -1.98 | | |
| TFE3 | P19532 | PIK3C2G-202 | ENST00000433979 | 4840 nt | APPRIS P1 TSL 5 BASIC | 2.68 | □□□□□ -1.98 | | |
| TFE3 | P19532 | AC011124.2-201 | ENST00000518739 | 3222 nt | TSL 1 (best) BASIC | 2.68 | □□□□□ -1.98 | | |
| TFE3 | P19532 | RNU1-51P-201 | ENST00000365345 | 176 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| TFE3 | P19532 | RNU6-1189P-201 | ENST00000383958 | 107 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| TFE3 | P19532 | SNORD38C-201 | ENST00000384381 | 69 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| TFE3 | P19532 | TRAJ26-201 | ENST00000390511 | 60 nt | APPRIS P1 BASIC | 2.68 | □□□□□ -1.98 | | |
| TFE3 | P19532 | RNA5SP184-201 | ENST00000411071 | 108 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| TFE3 | P19532 | AL031386.1-201 | ENST00000411940 | 142 nt | TSL 5 BASIC | 2.68 | □□□□□ -1.98 | | |
| TFE3 | P19532 | AC020594.1-201 | ENST00000437680 | 338 nt | TSL 3 BASIC | 2.68 | □□□□□ -1.98 | | |
| TFE3 | P19532 | SNORA31.10-201 | ENST00000516482 | 106 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| TFE3 | P19532 | RNU6-1061P-201 | ENST00000516530 | 99 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| TFE3 | P19532 | RNU7-25P-201 | ENST00000516544 | 62 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| TFE3 | P19532 | RNU6-919P-201 | ENST00000516731 | 104 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| TFE3 | P19532 | U1.36-201 | ENST00000620684 | 176 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| TFE3 | P19532 | SMARCAD1-201 | ENST00000354268 | 4912 nt | APPRIS P3 TSL 1 (best) BASIC | 2.68 | □□□□□ -1.98 | | |
| TFE3 | P19532 | SAGE1-202 | ENST00000370709 | 2879 nt | APPRIS P2 TSL 5 BASIC | 2.67 | □□□□□ -1.98 | | |
| TFE3 | P19532 | Y_RNA.547-201 | ENST00000384654 | 119 nt | BASIC | 2.67 | □□□□□ -1.98 | | |
| TFE3 | P19532 | RNU6-1064P-201 | ENST00000410626 | 104 nt | BASIC | 2.67 | □□□□□ -1.98 | | |
| TFE3 | P19532 | RNU2-7P-201 | ENST00000410794 | 178 nt | BASIC | 2.67 | □□□□□ -1.98 | | |
| TFE3 | P19532 | LINC01766-201 | ENST00000453968 | 362 nt | TSL 3 BASIC | 2.67 | □□□□□ -1.98 | | |
| TFE3 | P19532 | AC114811.1-201 | ENST00000507207 | 168 nt | BASIC | 2.67 | □□□□□ -1.98 | | |
| TFE3 | P19532 | RNA5SP236-201 | ENST00000516169 | 116 nt | BASIC | 2.67 | □□□□□ -1.98 | | |
| TFE3 | P19532 | RNU6-1149P-201 | ENST00000516810 | 97 nt | BASIC | 2.67 | □□□□□ -1.98 | | |
| TFE3 | P19532 | ZNF415-224 | ENST00000601493 | 2132 nt | TSL 1 (best) BASIC | 2.67 | □□□□□ -1.98 | | |
| TFE3 | P19532 | SYTL2-230 | ENST00000634661 | 6672 nt | TSL 5 BASIC | 2.66 | □□□□□ -1.98 | | |
| TFE3 | P19532 | RNU6-1325P-201 | ENST00000364905 | 105 nt | BASIC | 2.66 | □□□□□ -1.98 | | |
| TFE3 | P19532 | TRAV41-201 | ENST00000390468 | 336 nt | APPRIS P1 BASIC | 2.66 | □□□□□ -1.98 | | |
| TFE3 | P19532 | AC018511.2-201 | ENST00000413431 | 189 nt | TSL 3 BASIC | 2.66 | □□□□□ -1.98 | | |
| TFE3 | P19532 | AL021397.1-201 | ENST00000451806 | 248 nt | BASIC | 2.66 | □□□□□ -1.98 | | |
| TFE3 | P19532 | RNA5SP320-201 | ENST00000516263 | 124 nt | BASIC | 2.66 | □□□□□ -1.98 | | |
| TFE3 | P19532 | RNVU1-2-201 | ENST00000516326 | 135 nt | BASIC | 2.66 | □□□□□ -1.98 | | |
| TFE3 | P19532 | RNU6-826P-201 | ENST00000516827 | 104 nt | BASIC | 2.66 | □□□□□ -1.98 | | |
| TFE3 | P19532 | AC004486.1-201 | ENST00000546846 | 233 nt | BASIC | 2.66 | □□□□□ -1.98 | | |
| TFE3 | P19532 | MAP3K2-203 | ENST00000409947 | 10992 nt | APPRIS P1 TSL 1 (best) BASIC | 2.65 | □□□□□ -1.98 | | |
| TFE3 | P19532 | AASDH-207 | ENST00000513376 | 3241 nt | TSL 1 (best) BASIC | 2.65 | □□□□□ -1.98 | | |
| TFE3 | P19532 | UHMK1-204 | ENST00000545294 | 8117 nt | TSL 2 BASIC | 2.65 | □□□□□ -1.99 | | |
| TFE3 | P19532 | Y_RNA.37-201 | ENST00000362606 | 108 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| TFE3 | P19532 | Y_RNA.510-201 | ENST00000384511 | 114 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| TFE3 | P19532 | Y_RNA.525-201 | ENST00000384570 | 113 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| TFE3 | P19532 | RNU6-476P-201 | ENST00000384726 | 107 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| TFE3 | P19532 | MIR196B-201 | ENST00000384852 | 84 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| TFE3 | P19532 | Y_RNA.617-201 | ENST00000410920 | 90 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| TFE3 | P19532 | AL445646.1-201 | ENST00000431784 | 216 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| TFE3 | P19532 | HSPE1P9-201 | ENST00000440046 | 311 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| TFE3 | P19532 | AC087499.4-201 | ENST00000448505 | 178 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| TFE3 | P19532 | Y_RNA.651-201 | ENST00000459380 | 103 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| TFE3 | P19532 | SUB1P4-201 | ENST00000566062 | 339 nt | BASIC | 2.65 | □□□□□ -1.99 | | |
| TFE3 | P19532 | AL161716.1-201 | ENST00000606365 | 273 nt | TSL 5 BASIC | 2.65 | □□□□□ -1.99 | | |
| TFE3 | P19532 | OR51A4-202 | ENST00000641898 | 4393 nt | APPRIS P1 BASIC | 2.65 | □□□□□ -1.99 | | |
| TFE3 | P19532 | TANK-201 | ENST00000259075 | 2152 nt | APPRIS P1 TSL 1 (best) BASIC | 2.64 | □□□□□ -1.99 | | |
| TFE3 | P19532 | MIRLET7C-201 | ENST00000362160 | 84 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| TFE3 | P19532 | SNORD58C-201 | ENST00000365223 | 64 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| TFE3 | P19532 | RNU1-109P-201 | ENST00000383960 | 147 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| TFE3 | P19532 | RNA5SP481-201 | ENST00000516814 | 122 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| TFE3 | P19532 | SCARNA15-202 | ENST00000516881 | 127 nt | BASIC | 2.64 | □□□□□ -1.99 | | |
| TFE3 | P19532 | SNORD14A-201 | ENST00000606526 | 91 nt | BASIC | 2.64 | □□□□□ -1.99 | | |