Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 Y_RNA.28-201ENST00000362554 111 ntBASIC0.87□□□□□ -2.27
SDC1P18827 RNU6-1209P-201ENST00000363655 107 ntBASIC0.87□□□□□ -2.27
SDC1P18827 RNU6-801P-201ENST00000364087 105 ntBASIC0.87□□□□□ -2.27
SDC1P18827 Y_RNA.796-201ENST00000364268 102 ntBASIC0.87□□□□□ -2.27
SDC1P18827 Y_RNA.799-201ENST00000364992 102 ntBASIC0.87□□□□□ -2.27
SDC1P18827 SNORA63.7-201ENST00000365579 123 ntBASIC0.87□□□□□ -2.27
SDC1P18827 SNORA72.4-201ENST00000384174 132 ntBASIC0.87□□□□□ -2.27
SDC1P18827 SNORA80D-201ENST00000384488 135 ntBASIC0.87□□□□□ -2.27
SDC1P18827 HSPE1P25-201ENST00000455484 251 ntBASIC0.87□□□□□ -2.27
SDC1P18827 NDUFA4P2-201ENST00000489989 244 ntBASIC0.87□□□□□ -2.27
SDC1P18827 RNU7-41P-201ENST00000515917 61 ntBASIC0.87□□□□□ -2.27
SDC1P18827 SNORA18.7-201ENST00000516910 131 ntBASIC0.87□□□□□ -2.27
SDC1P18827 RNU6-897P-201ENST00000517135 105 ntBASIC0.87□□□□□ -2.27
SDC1P18827 AC136628.3-201ENST00000521868 290 ntBASIC0.87□□□□□ -2.27
SDC1P18827 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.86□□□□□ -2.27
SDC1P18827 Y_RNA.183-201ENST00000363882 113 ntBASIC0.86□□□□□ -2.27
SDC1P18827 Y_RNA.460-201ENST00000384255 102 ntBASIC0.86□□□□□ -2.27
SDC1P18827 Y_RNA.535-201ENST00000384612 99 ntBASIC0.86□□□□□ -2.27
SDC1P18827 SNORA26.5-201ENST00000391215 123 ntBASIC0.86□□□□□ -2.27
SDC1P18827 MIR1278-201ENST00000408753 81 ntBASIC0.86□□□□□ -2.27
SDC1P18827 Y_RNA.602-201ENST00000410535 92 ntBASIC0.86□□□□□ -2.27
SDC1P18827 Y_RNA.638-201ENST00000459374 113 ntBASIC0.86□□□□□ -2.27
SDC1P18827 RNU7-21P-201ENST00000459430 62 ntBASIC0.86□□□□□ -2.27
SDC1P18827 SNORD124-201ENST00000459577 104 ntBASIC0.86□□□□□ -2.27
SDC1P18827 Y_RNA.631-201ENST00000459607 101 ntBASIC0.86□□□□□ -2.27
SDC1P18827 RNU6-1053P-201ENST00000515930 101 ntBASIC0.86□□□□□ -2.27
SDC1P18827 RNU6-496P-201ENST00000516145 99 ntBASIC0.86□□□□□ -2.27
SDC1P18827 RNU6-191P-201ENST00000516295 94 ntBASIC0.86□□□□□ -2.27
SDC1P18827 Y_RNA.714-201ENST00000517065 90 ntBASIC0.86□□□□□ -2.27
SDC1P18827 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.86□□□□□ -2.27
SDC1P18827 AC005357.1-201ENST00000588399 301 ntBASIC0.86□□□□□ -2.27
SDC1P18827 JPX_2.1-201ENST00000614161 69 ntBASIC0.86□□□□□ -2.27
SDC1P18827 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.86□□□□□ -2.27
SDC1P18827 AC008163.1-202ENST00000636004 2889 ntBASIC0.86□□□□□ -2.27
SDC1P18827 Y_RNA.105-201ENST00000363182 111 ntBASIC0.85□□□□□ -2.27
SDC1P18827 Y_RNA.138-201ENST00000363462 102 ntBASIC0.85□□□□□ -2.27
SDC1P18827 SNORD14E-201ENST00000364009 85 ntBASIC0.85□□□□□ -2.27
SDC1P18827 MIR520C-201ENST00000385005 87 ntBASIC0.85□□□□□ -2.27
SDC1P18827 MIR15B-201ENST00000385045 98 ntBASIC0.85□□□□□ -2.27
SDC1P18827 SNORD115-46-201ENST00000390982 71 ntBASIC0.85□□□□□ -2.27
SDC1P18827 MIR1252-201ENST00000408861 65 ntBASIC0.85□□□□□ -2.27
SDC1P18827 SNORA36B-201ENST00000410438 131 ntBASIC0.85□□□□□ -2.27
SDC1P18827 AL603825.1-201ENST00000438481 80 ntBASIC0.85□□□□□ -2.27
SDC1P18827 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.85□□□□□ -2.27
SDC1P18827 RNU6-437P-201ENST00000459408 95 ntBASIC0.85□□□□□ -2.27
SDC1P18827 SNORD123-201ENST00000459473 70 ntBASIC0.85□□□□□ -2.27
SDC1P18827 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC0.85□□□□□ -2.27
SDC1P18827 AC005840.1-201ENST00000498412 377 ntBASIC0.85□□□□□ -2.27
SDC1P18827 UBL5P1-201ENST00000507979 193 ntBASIC0.85□□□□□ -2.27
SDC1P18827 AP003716.2-201ENST00000528260 108 ntBASIC0.85□□□□□ -2.27
SDC1P18827 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC0.85□□□□□ -2.27
SDC1P18827 MIR4764-201ENST00000580680 88 ntBASIC0.85□□□□□ -2.27
SDC1P18827 AC134026.1-201ENST00000623249 2239 ntBASIC0.85□□□□□ -2.27
SDC1P18827 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.85□□□□□ -2.27
SDC1P18827 Y_RNA.61-201ENST00000362835 102 ntBASIC0.84□□□□□ -2.27
SDC1P18827 RNA5SP264-201ENST00000363115 107 ntBASIC0.84□□□□□ -2.27
SDC1P18827 Y_RNA.389-201ENST00000383924 113 ntBASIC0.84□□□□□ -2.27
SDC1P18827 MIR532-201ENST00000385025 91 ntBASIC0.84□□□□□ -2.27
SDC1P18827 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.84□□□□□ -2.27
SDC1P18827 RNU6-101P-201ENST00000410323 104 ntBASIC0.84□□□□□ -2.27
SDC1P18827 RNU6-121P-201ENST00000410525 99 ntBASIC0.84□□□□□ -2.27
SDC1P18827 SNRPGP14-201ENST00000435400 219 ntBASIC0.84□□□□□ -2.27
SDC1P18827 SNORA25.3-201ENST00000363205 127 ntBASIC0.83□□□□□ -2.28
SDC1P18827 Y_RNA.136-201ENST00000363444 102 ntBASIC0.83□□□□□ -2.28
SDC1P18827 RNU6-674P-201ENST00000363831 107 ntBASIC0.83□□□□□ -2.28
SDC1P18827 RNU6-1187P-201ENST00000364771 110 ntBASIC0.83□□□□□ -2.28
SDC1P18827 RNU6-392P-201ENST00000364926 101 ntBASIC0.83□□□□□ -2.28
SDC1P18827 SNORA22B-201ENST00000383876 138 ntBASIC0.83□□□□□ -2.28
SDC1P18827 RNU6-1248P-201ENST00000391096 64 ntBASIC0.83□□□□□ -2.28
SDC1P18827 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.83□□□□□ -2.28
SDC1P18827 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.83□□□□□ -2.28
SDC1P18827 RNU6-764P-201ENST00000516396 105 ntBASIC0.83□□□□□ -2.28
SDC1P18827 RNU7-43P-201ENST00000516554 64 ntBASIC0.83□□□□□ -2.28
SDC1P18827 Y_RNA.721-201ENST00000517207 102 ntBASIC0.83□□□□□ -2.28
SDC1P18827 RNU6-988P-201ENST00000519081 107 ntBASIC0.83□□□□□ -2.28
SDC1P18827 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.83□□□□□ -2.28
SDC1P18827 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC0.83□□□□□ -2.28
SDC1P18827 RPL23AP91-201ENST00000569211 455 ntBASIC0.83□□□□□ -2.28
SDC1P18827 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.83□□□□□ -2.28
SDC1P18827 AC008507.4-201ENST00000585464 127 ntBASIC0.83□□□□□ -2.28
SDC1P18827 AC087685.1-201ENST00000587507 141 ntBASIC0.83□□□□□ -2.28
SDC1P18827 AC136443.5-201ENST00000603741 370 ntBASIC0.83□□□□□ -2.28
SDC1P18827 FAM71BP1-201ENST00000604431 523 ntBASIC0.83□□□□□ -2.28
SDC1P18827 MIR103A2-201ENST00000362154 78 ntBASIC0.82□□□□□ -2.28
SDC1P18827 MIR337-201ENST00000362281 93 ntBASIC0.82□□□□□ -2.28
SDC1P18827 RNU4-90P-201ENST00000362773 141 ntBASIC0.82□□□□□ -2.28
SDC1P18827 Y_RNA.128-201ENST00000363391 112 ntBASIC0.82□□□□□ -2.28
SDC1P18827 RNU6-763P-201ENST00000390865 106 ntBASIC0.82□□□□□ -2.28
SDC1P18827 Y_RNA.581-201ENST00000391017 97 ntBASIC0.82□□□□□ -2.28
SDC1P18827 MTCO2P33-201ENST00000402100 465 ntBASIC0.82□□□□□ -2.28
SDC1P18827 MIR1185-1-201ENST00000408598 86 ntBASIC0.82□□□□□ -2.28
SDC1P18827 RNU6-321P-201ENST00000410912 106 ntBASIC0.82□□□□□ -2.28
SDC1P18827 MTCO1P5-201ENST00000433573 344 ntBASIC0.82□□□□□ -2.28
SDC1P18827 SNORD11-201ENST00000459124 84 ntBASIC0.82□□□□□ -2.28
SDC1P18827 RNU7-90P-201ENST00000459216 62 ntBASIC0.82□□□□□ -2.28
SDC1P18827 RN7SKP164-201ENST00000516138 266 ntBASIC0.82□□□□□ -2.28
SDC1P18827 Y_RNA.711-201ENST00000516993 102 ntBASIC0.82□□□□□ -2.28
SDC1P18827 AC007742.2-201ENST00000618226 398 ntBASIC0.82□□□□□ -2.28
SDC1P18827 AC134503.1-201ENST00000633048 54 ntBASIC0.82□□□□□ -2.28
SDC1P18827 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.82□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 121.1 ms