Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 NDUFA4P2-201ENST00000489989 244 ntBASIC1.33□□□□□ -2.2
HMGB1P09429 RNU6-475P-201ENST00000516073 104 ntBASIC1.33□□□□□ -2.2
HMGB1P09429 RNA5SP255-201ENST00000516370 107 ntBASIC1.33□□□□□ -2.2
HMGB1P09429 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
HMGB1P09429 AC136628.3-201ENST00000521868 290 ntBASIC1.33□□□□□ -2.2
HMGB1P09429 AP003716.2-201ENST00000528260 108 ntBASIC1.33□□□□□ -2.2
HMGB1P09429 AC109810.1-201ENST00000534066 224 ntBASIC1.33□□□□□ -2.2
HMGB1P09429 uc_338.22-201ENST00000622722 187 ntBASIC1.33□□□□□ -2.2
HMGB1P09429 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.33□□□□□ -2.2
HMGB1P09429 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.33□□□□□ -2.2
HMGB1P09429 MIR608-201ENST00000384820 100 ntBASIC1.32□□□□□ -2.2
HMGB1P09429 RNU6-308P-201ENST00000390957 107 ntBASIC1.32□□□□□ -2.2
HMGB1P09429 SNORD28B-201ENST00000390993 75 ntBASIC1.32□□□□□ -2.2
HMGB1P09429 Y_RNA.602-201ENST00000410535 92 ntBASIC1.32□□□□□ -2.2
HMGB1P09429 RPS29P28-201ENST00000446439 141 ntBASIC1.32□□□□□ -2.2
HMGB1P09429 RN7SKP164-201ENST00000516138 266 ntBASIC1.32□□□□□ -2.2
HMGB1P09429 AC124312.5-201ENST00000604451 268 ntBASIC1.32□□□□□ -2.2
HMGB1P09429 MIR6078-201ENST00000611069 100 ntBASIC1.32□□□□□ -2.2
HMGB1P09429 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.32□□□□□ -2.2
HMGB1P09429 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.31□□□□□ -2.2
HMGB1P09429 Y_RNA.112-201ENST00000363250 102 ntBASIC1.31□□□□□ -2.2
HMGB1P09429 SNORD113-8-201ENST00000363497 74 ntBASIC1.31□□□□□ -2.2
HMGB1P09429 MIR1285-1-201ENST00000408593 84 ntBASIC1.31□□□□□ -2.2
HMGB1P09429 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.31□□□□□ -2.2
HMGB1P09429 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.31□□□□□ -2.2
HMGB1P09429 MIR4769-201ENST00000584126 77 ntBASIC1.31□□□□□ -2.2
HMGB1P09429 Pinc.1-201ENST00000616452 154 ntBASIC1.31□□□□□ -2.2
HMGB1P09429 Y_RNA.419-201ENST00000384041 102 ntBASIC1.3□□□□□ -2.2
HMGB1P09429 SNORA72.4-201ENST00000384174 132 ntBASIC1.3□□□□□ -2.2
HMGB1P09429 MIR570-201ENST00000384917 97 ntBASIC1.3□□□□□ -2.2
HMGB1P09429 MTCO2P33-201ENST00000402100 465 ntBASIC1.3□□□□□ -2.2
HMGB1P09429 RNA5SP458-201ENST00000516188 119 ntBASIC1.3□□□□□ -2.2
HMGB1P09429 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.3□□□□□ -2.2
HMGB1P09429 MIR376A1-201ENST00000616574 68 ntBASIC1.3□□□□□ -2.2
HMGB1P09429 RNU6-801P-201ENST00000364087 105 ntBASIC1.29□□□□□ -2.2
HMGB1P09429 MIR605-201ENST00000385078 83 ntBASIC1.29□□□□□ -2.2
HMGB1P09429 SNORD89-201ENST00000390981 114 ntBASIC1.29□□□□□ -2.2
HMGB1P09429 AC022028.1-201ENST00000412054 408 ntBASIC1.29□□□□□ -2.2
HMGB1P09429 AC005840.1-201ENST00000498412 377 ntBASIC1.29□□□□□ -2.2
HMGB1P09429 RNU6-1007P-201ENST00000516586 107 ntBASIC1.29□□□□□ -2.2
HMGB1P09429 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.29□□□□□ -2.2
HMGB1P09429 AC005357.1-201ENST00000588399 301 ntBASIC1.29□□□□□ -2.2
HMGB1P09429 AC015726.2-201ENST00000620112 122 ntBASIC1.29□□□□□ -2.2
HMGB1P09429 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
HMGB1P09429 AC023934.1-201ENST00000574529 2389 ntBASIC1.28□□□□□ -2.2
HMGB1P09429 RNU6-268P-201ENST00000364174 107 ntBASIC1.28□□□□□ -2.2
HMGB1P09429 RNU6-1067P-201ENST00000384752 107 ntBASIC1.28□□□□□ -2.2
HMGB1P09429 RNU6-994P-201ENST00000410507 111 ntBASIC1.28□□□□□ -2.2
HMGB1P09429 MTND4P19-201ENST00000446659 478 ntBASIC1.28□□□□□ -2.2
HMGB1P09429 AC008507.4-201ENST00000585464 127 ntBASIC1.28□□□□□ -2.2
HMGB1P09429 snoU13.31-201ENST00000607291 104 ntBASIC1.28□□□□□ -2.2
HMGB1P09429 AL050343.2-201ENST00000607338 280 ntBASIC1.28□□□□□ -2.2
HMGB1P09429 RNU6-94P-201ENST00000607728 107 ntBASIC1.28□□□□□ -2.2
HMGB1P09429 Y_RNA.431-201ENST00000384086 102 ntBASIC1.27□□□□□ -2.21
HMGB1P09429 AC005534.2-201ENST00000431047 433 ntBASIC1.27□□□□□ -2.21
HMGB1P09429 AC067940.1-201ENST00000458411 300 ntBASIC1.27□□□□□ -2.21
HMGB1P09429 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.27□□□□□ -2.21
HMGB1P09429 AC012433.1-201ENST00000588916 398 ntBASIC1.27□□□□□ -2.21
HMGB1P09429 AC090971.5-201ENST00000621102 293 ntBASIC1.27□□□□□ -2.21
HMGB1P09429 Y_RNA.445-201ENST00000384168 102 ntBASIC1.26□□□□□ -2.21
HMGB1P09429 SNORD72-201ENST00000390994 80 ntBASIC1.26□□□□□ -2.21
HMGB1P09429 SNORA26.5-201ENST00000391215 123 ntBASIC1.26□□□□□ -2.21
HMGB1P09429 U8.17-201ENST00000391292 132 ntBASIC1.26□□□□□ -2.21
HMGB1P09429 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1.26□□□□□ -2.21
HMGB1P09429 RNU6-237P-201ENST00000515985 71 ntBASIC1.26□□□□□ -2.21
HMGB1P09429 7SK.10-201ENST00000621414 298 ntBASIC1.26□□□□□ -2.21
HMGB1P09429 AC090574.1-201ENST00000623186 233 ntBASIC1.26□□□□□ -2.21
HMGB1P09429 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.25□□□□□ -2.21
HMGB1P09429 RNU6-674P-201ENST00000363831 107 ntBASIC1.25□□□□□ -2.21
HMGB1P09429 RNU6-450P-201ENST00000364654 107 ntBASIC1.25□□□□□ -2.21
HMGB1P09429 RNU6-1187P-201ENST00000364771 110 ntBASIC1.25□□□□□ -2.21
HMGB1P09429 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.25□□□□□ -2.21
HMGB1P09429 AC092473.1-201ENST00000441098 221 ntBASIC1.25□□□□□ -2.21
HMGB1P09429 RPL39P28-201ENST00000465655 155 ntBASIC1.25□□□□□ -2.21
HMGB1P09429 RNU6-191P-201ENST00000516295 94 ntBASIC1.25□□□□□ -2.21
HMGB1P09429 RNU11-2P-201ENST00000516898 142 ntBASIC1.25□□□□□ -2.21
HMGB1P09429 RNU7-181P-201ENST00000517234 74 ntBASIC1.25□□□□□ -2.21
HMGB1P09429 MIR4300-201ENST00000581016 96 ntBASIC1.25□□□□□ -2.21
HMGB1P09429 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.25□□□□□ -2.21
HMGB1P09429 Y_RNA.327-201ENST00000365201 102 ntBASIC1.24□□□□□ -2.21
HMGB1P09429 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
HMGB1P09429 AC087343.1-201ENST00000477341 475 ntBASIC1.24□□□□□ -2.21
HMGB1P09429 AC104695.3-201ENST00000604052 296 ntBASIC1.24□□□□□ -2.21
HMGB1P09429 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
HMGB1P09429 Y_RNA.31-201ENST00000362574 102 ntBASIC1.23□□□□□ -2.21
HMGB1P09429 RNU6-654P-201ENST00000364373 107 ntBASIC1.23□□□□□ -2.21
HMGB1P09429 RNU6-1335P-201ENST00000365426 107 ntBASIC1.23□□□□□ -2.21
HMGB1P09429 Y_RNA.395-201ENST00000383945 109 ntBASIC1.23□□□□□ -2.21
HMGB1P09429 Y_RNA.418-201ENST00000384029 102 ntBASIC1.23□□□□□ -2.21
HMGB1P09429 SNORA2B-201ENST00000384583 137 ntBASIC1.23□□□□□ -2.21
HMGB1P09429 AL035398.1-201ENST00000430869 322 ntBASIC1.23□□□□□ -2.21
HMGB1P09429 SNRPGP14-201ENST00000435400 219 ntBASIC1.23□□□□□ -2.21
HMGB1P09429 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.23□□□□□ -2.21
HMGB1P09429 AC136443.5-201ENST00000603741 370 ntBASIC1.23□□□□□ -2.21
HMGB1P09429 SNORD114-21-201ENST00000606412 72 ntBASIC1.23□□□□□ -2.21
HMGB1P09429 AC106800.4-201ENST00000614905 153 ntBASIC1.23□□□□□ -2.21
HMGB1P09429 MIR6516-201ENST00000630554 81 ntBASIC1.23□□□□□ -2.21
HMGB1P09429 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.23□□□□□ -2.21
HMGB1P09429 RNU6-899P-201ENST00000363947 107 ntBASIC1.22□□□□□ -2.21
HMGB1P09429 SNORA63.7-201ENST00000365579 123 ntBASIC1.22□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 193.5 ms