Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 RNU6-1209P-201ENST00000363655 107 ntBASIC0.34□□□□□ -2.36
CPSF4O95639 U8.7-201ENST00000364940 136 ntBASIC0.34□□□□□ -2.36
CPSF4O95639 Y_RNA.331-201ENST00000365267 102 ntBASIC0.34□□□□□ -2.36
CPSF4O95639 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.34□□□□□ -2.36
CPSF4O95639 SNORD116-29-201ENST00000384516 83 ntBASIC0.34□□□□□ -2.36
CPSF4O95639 RNU6-1067P-201ENST00000384752 107 ntBASIC0.34□□□□□ -2.36
CPSF4O95639 RNU1-119P-201ENST00000391122 165 ntBASIC0.34□□□□□ -2.36
CPSF4O95639 MIR1827-201ENST00000408549 66 ntBASIC0.34□□□□□ -2.36
CPSF4O95639 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.34□□□□□ -2.36
CPSF4O95639 RNU6-613P-201ENST00000410412 108 ntBASIC0.34□□□□□ -2.36
CPSF4O95639 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.34□□□□□ -2.36
CPSF4O95639 AC005534.2-201ENST00000431047 433 ntBASIC0.34□□□□□ -2.36
CPSF4O95639 SNRPGP14-201ENST00000435400 219 ntBASIC0.34□□□□□ -2.36
CPSF4O95639 RPL23AP54-201ENST00000495129 419 ntBASIC0.34□□□□□ -2.36
CPSF4O95639 AC018659.1-201ENST00000551083 169 ntBASIC0.34□□□□□ -2.36
CPSF4O95639 AL355375.2-201ENST00000574825 175 ntBASIC0.34□□□□□ -2.36
CPSF4O95639 MIR4300-201ENST00000581016 96 ntBASIC0.34□□□□□ -2.36
CPSF4O95639 AL512605.2-201ENST00000592972 256 ntBASIC0.34□□□□□ -2.36
CPSF4O95639 VN1R91P-201ENST00000594377 169 ntBASIC0.34□□□□□ -2.36
CPSF4O95639 AC025253.1-201ENST00000613623 543 ntBASIC0.34□□□□□ -2.36
CPSF4O95639 JPX_2.1-201ENST00000614161 69 ntBASIC0.34□□□□□ -2.36
CPSF4O95639 Pinc.1-201ENST00000616452 154 ntBASIC0.34□□□□□ -2.36
CPSF4O95639 AC007742.2-201ENST00000618226 398 ntBASIC0.34□□□□□ -2.36
CPSF4O95639 Y_RNA.4-201ENST00000362333 112 ntBASIC0.33□□□□□ -2.36
CPSF4O95639 Y_RNA.796-201ENST00000364268 102 ntBASIC0.33□□□□□ -2.36
CPSF4O95639 Y_RNA.259-201ENST00000364619 101 ntBASIC0.33□□□□□ -2.36
CPSF4O95639 Y_RNA.799-201ENST00000364992 102 ntBASIC0.33□□□□□ -2.36
CPSF4O95639 RNU6-945P-201ENST00000383947 107 ntBASIC0.33□□□□□ -2.36
CPSF4O95639 RNU6-442P-201ENST00000383968 104 ntBASIC0.33□□□□□ -2.36
CPSF4O95639 SNORD105-201ENST00000386910 85 ntBASIC0.33□□□□□ -2.36
CPSF4O95639 RNY4P36-201ENST00000391116 96 ntBASIC0.33□□□□□ -2.36
CPSF4O95639 Y_RNA.619-201ENST00000410951 90 ntBASIC0.33□□□□□ -2.36
CPSF4O95639 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.33□□□□□ -2.36
CPSF4O95639 HMGN1P10-201ENST00000474557 553 ntBASIC0.33□□□□□ -2.36
CPSF4O95639 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.33□□□□□ -2.36
CPSF4O95639 RNU6-830P-201ENST00000516353 107 ntBASIC0.33□□□□□ -2.36
CPSF4O95639 RNU7-115P-201ENST00000516433 55 ntBASIC0.33□□□□□ -2.36
CPSF4O95639 MIR2115-201ENST00000516657 100 ntBASIC0.33□□□□□ -2.36
CPSF4O95639 AC127455.1-201ENST00000565496 145 ntBASIC0.33□□□□□ -2.36
CPSF4O95639 MIR3145-201ENST00000580727 82 ntBASIC0.33□□□□□ -2.36
CPSF4O95639 MIR151B-201ENST00000584249 96 ntBASIC0.33□□□□□ -2.36
CPSF4O95639 AC087685.1-201ENST00000587507 141 ntBASIC0.33□□□□□ -2.36
CPSF4O95639 AL355073.2-201ENST00000612106 557 ntBASIC0.33□□□□□ -2.36
CPSF4O95639 AC010205.1-201ENST00000616668 449 ntBASIC0.33□□□□□ -2.36
CPSF4O95639 AC091925.1-201ENST00000623204 462 ntBASIC0.33□□□□□ -2.36
CPSF4O95639 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.33□□□□□ -2.36
CPSF4O95639 MIR5087-201ENST00000635826 76 ntBASIC0.33□□□□□ -2.36
CPSF4O95639 MIR4272-201ENST00000635924 64 ntBASIC0.33□□□□□ -2.36
CPSF4O95639 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.33□□□□□ -2.36
CPSF4O95639 MIR1-1-201ENST00000362147 71 ntBASIC0.32□□□□□ -2.36
CPSF4O95639 SNORD18A-201ENST00000363753 72 ntBASIC0.32□□□□□ -2.36
CPSF4O95639 RNU6-268P-201ENST00000364174 107 ntBASIC0.32□□□□□ -2.36
CPSF4O95639 RNU6-1040P-201ENST00000383974 107 ntBASIC0.32□□□□□ -2.36
CPSF4O95639 Y_RNA.463-201ENST00000384271 102 ntBASIC0.32□□□□□ -2.36
CPSF4O95639 MIR802-201ENST00000390235 94 ntBASIC0.32□□□□□ -2.36
CPSF4O95639 U8.17-201ENST00000391292 132 ntBASIC0.32□□□□□ -2.36
CPSF4O95639 MIR1278-201ENST00000408753 81 ntBASIC0.32□□□□□ -2.36
CPSF4O95639 RNA5SP222-201ENST00000411039 105 ntBASIC0.32□□□□□ -2.36
CPSF4O95639 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.32□□□□□ -2.36
CPSF4O95639 AC098614.3-201ENST00000438957 440 ntBASIC0.32□□□□□ -2.36
CPSF4O95639 RNU6-277P-201ENST00000516272 106 ntBASIC0.32□□□□□ -2.36
CPSF4O95639 RNU7-181P-201ENST00000517234 74 ntBASIC0.32□□□□□ -2.36
CPSF4O95639 MIR5188-201ENST00000583467 113 ntBASIC0.32□□□□□ -2.36
CPSF4O95639 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.32□□□□□ -2.36
CPSF4O95639 MIR548AY-201ENST00000617669 107 ntBASIC0.32□□□□□ -2.36
CPSF4O95639 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.32□□□□□ -2.36
CPSF4O95639 Y_RNA.168-201ENST00000363740 102 ntBASIC0.31□□□□□ -2.36
CPSF4O95639 RNU6-396P-201ENST00000365369 105 ntBASIC0.31□□□□□ -2.36
CPSF4O95639 Y_RNA.370-201ENST00000365589 108 ntBASIC0.31□□□□□ -2.36
CPSF4O95639 Y_RNA.387-201ENST00000383918 102 ntBASIC0.31□□□□□ -2.36
CPSF4O95639 RNY1P8-201ENST00000383970 114 ntBASIC0.31□□□□□ -2.36
CPSF4O95639 SNORA36.2-201ENST00000384004 127 ntBASIC0.31□□□□□ -2.36
CPSF4O95639 Y_RNA.428-201ENST00000384078 102 ntBASIC0.31□□□□□ -2.36
CPSF4O95639 Y_RNA.458-201ENST00000384240 102 ntBASIC0.31□□□□□ -2.36
CPSF4O95639 Y_RNA.462-201ENST00000384268 102 ntBASIC0.31□□□□□ -2.36
CPSF4O95639 SNORA51.10-201ENST00000384418 136 ntBASIC0.31□□□□□ -2.36
CPSF4O95639 MTCO2P33-201ENST00000402100 465 ntBASIC0.31□□□□□ -2.36
CPSF4O95639 AC024067.1-201ENST00000426199 223 ntBASIC0.31□□□□□ -2.36
CPSF4O95639 AC244023.1-201ENST00000426884 112 ntBASIC0.31□□□□□ -2.36
CPSF4O95639 SNORA20.3-201ENST00000516880 132 ntBASIC0.31□□□□□ -2.36
CPSF4O95639 RNU7-110P-201ENST00000516891 62 ntBASIC0.31□□□□□ -2.36
CPSF4O95639 Y_RNA.718-201ENST00000517110 102 ntBASIC0.31□□□□□ -2.36
CPSF4O95639 SNORD116.3-201ENST00000517176 78 ntBASIC0.31□□□□□ -2.36
CPSF4O95639 MIR548AO-201ENST00000579992 96 ntBASIC0.31□□□□□ -2.36
CPSF4O95639 AC008507.4-201ENST00000585464 127 ntBASIC0.31□□□□□ -2.36
CPSF4O95639 AC104695.3-201ENST00000604052 296 ntBASIC0.31□□□□□ -2.36
CPSF4O95639 AC242498.1-201ENST00000604134 111 ntBASIC0.31□□□□□ -2.36
CPSF4O95639 Y_RNA.772-201ENST00000606692 102 ntBASIC0.31□□□□□ -2.36
CPSF4O95639 AC011373.1-201ENST00000607270 237 ntBASIC0.31□□□□□ -2.36
CPSF4O95639 AC243994.1-201ENST00000618627 109 ntBASIC0.31□□□□□ -2.36
CPSF4O95639 AC243829.3-201ENST00000622177 108 ntBASIC0.31□□□□□ -2.36
CPSF4O95639 RNU6-369P-201ENST00000362515 102 ntBASIC0.3□□□□□ -2.36
CPSF4O95639 Y_RNA.142-201ENST00000363491 102 ntBASIC0.3□□□□□ -2.36
CPSF4O95639 Y_RNA.496-201ENST00000384444 101 ntBASIC0.3□□□□□ -2.36
CPSF4O95639 RNU6-1237P-201ENST00000384777 107 ntBASIC0.3□□□□□ -2.36
CPSF4O95639 SNORD72-201ENST00000390994 80 ntBASIC0.3□□□□□ -2.36
CPSF4O95639 RNU4-30P-201ENST00000410245 143 ntBASIC0.3□□□□□ -2.36
CPSF4O95639 AC138393.2-201ENST00000414742 246 ntBASIC0.3□□□□□ -2.36
CPSF4O95639 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.3□□□□□ -2.36
CPSF4O95639 AC010655.3-201ENST00000478818 450 ntBASIC0.3□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms