Protein–RNA interactions for Protein: Q9NXS3

KLHL28, Kelch-like protein 28, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL28Q9NXS3 AC093019.1-201ENST00000443135 252 ntBASIC0.67□□□□□ -2.3
KLHL28Q9NXS3 AC082651.2-201ENST00000496833 166 ntBASIC0.67□□□□□ -2.3
KLHL28Q9NXS3 PRDX4P1-201ENST00000507189 574 ntBASIC0.67□□□□□ -2.3
KLHL28Q9NXS3 RNU6-155P-201ENST00000516347 100 ntBASIC0.67□□□□□ -2.3
KLHL28Q9NXS3 Y_RNA.718-201ENST00000517110 102 ntBASIC0.67□□□□□ -2.3
KLHL28Q9NXS3 AC005730.3-201ENST00000583067 366 ntBASIC0.67□□□□□ -2.3
KLHL28Q9NXS3 AC006380.1-201ENST00000603598 186 ntBASIC0.67□□□□□ -2.3
KLHL28Q9NXS3 AL132765.2-201ENST00000610812 351 ntBASIC0.67□□□□□ -2.3
KLHL28Q9NXS3 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.67□□□□□ -2.3
KLHL28Q9NXS3 RNU6-490P-201ENST00000362985 107 ntBASIC0.66□□□□□ -2.3
KLHL28Q9NXS3 RNU6-324P-201ENST00000363957 106 ntBASIC0.66□□□□□ -2.3
KLHL28Q9NXS3 Y_RNA.336-201ENST00000365307 109 ntBASIC0.66□□□□□ -2.3
KLHL28Q9NXS3 Y_RNA.387-201ENST00000383918 102 ntBASIC0.66□□□□□ -2.3
KLHL28Q9NXS3 RNU6-163P-201ENST00000384396 106 ntBASIC0.66□□□□□ -2.3
KLHL28Q9NXS3 MIR508-201ENST00000384857 115 ntBASIC0.66□□□□□ -2.3
KLHL28Q9NXS3 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC0.66□□□□□ -2.3
KLHL28Q9NXS3 FABP5P4-201ENST00000437203 171 ntBASIC0.66□□□□□ -2.3
KLHL28Q9NXS3 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.66□□□□□ -2.3
KLHL28Q9NXS3 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.66□□□□□ -2.3
KLHL28Q9NXS3 AC104985.2-201ENST00000620598 500 ntBASIC0.66□□□□□ -2.3
KLHL28Q9NXS3 AC027279.3-201ENST00000625055 122 ntBASIC0.66□□□□□ -2.3
KLHL28Q9NXS3 MIR1302-1-201ENST00000637932 143 ntBASIC0.66□□□□□ -2.3
KLHL28Q9NXS3 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.66□□□□□ -2.3
KLHL28Q9NXS3 AC023934.1-201ENST00000574529 2389 ntBASIC0.65□□□□□ -2.3
KLHL28Q9NXS3 Y_RNA.146-201ENST00000363549 102 ntBASIC0.65□□□□□ -2.31
KLHL28Q9NXS3 Y_RNA.329-201ENST00000365209 107 ntBASIC0.65□□□□□ -2.31
KLHL28Q9NXS3 RNU6-1040P-201ENST00000383974 107 ntBASIC0.65□□□□□ -2.31
KLHL28Q9NXS3 Y_RNA.463-201ENST00000384271 102 ntBASIC0.65□□□□□ -2.31
KLHL28Q9NXS3 Y_RNA.496-201ENST00000384444 101 ntBASIC0.65□□□□□ -2.31
KLHL28Q9NXS3 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.65□□□□□ -2.31
KLHL28Q9NXS3 MIR1298-201ENST00000408783 112 ntBASIC0.65□□□□□ -2.31
KLHL28Q9NXS3 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.65□□□□□ -2.31
KLHL28Q9NXS3 AC091951.2-201ENST00000500762 203 ntBASIC0.65□□□□□ -2.31
KLHL28Q9NXS3 CYCTP-201ENST00000504253 315 ntBASIC0.65□□□□□ -2.31
KLHL28Q9NXS3 AC006600.1-201ENST00000572529 153 ntBASIC0.65□□□□□ -2.31
KLHL28Q9NXS3 UBE2V2P2-201ENST00000587677 504 ntBASIC0.65□□□□□ -2.31
KLHL28Q9NXS3 AL353765.1-201ENST00000605514 183 ntBASIC0.65□□□□□ -2.31
KLHL28Q9NXS3 AC022441.3-201ENST00000605737 136 ntBASIC0.65□□□□□ -2.31
KLHL28Q9NXS3 AC104465.1-201ENST00000611365 139 ntBASIC0.65□□□□□ -2.31
KLHL28Q9NXS3 AC122108.2-201ENST00000611946 526 ntBASIC0.65□□□□□ -2.31
KLHL28Q9NXS3 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
KLHL28Q9NXS3 Y_RNA.36-201ENST00000362602 112 ntBASIC0.64□□□□□ -2.31
KLHL28Q9NXS3 SNORA72.1-201ENST00000363485 129 ntBASIC0.64□□□□□ -2.31
KLHL28Q9NXS3 Y_RNA.253-201ENST00000364562 112 ntBASIC0.64□□□□□ -2.31
KLHL28Q9NXS3 RNU6-1335P-201ENST00000365426 107 ntBASIC0.64□□□□□ -2.31
KLHL28Q9NXS3 MIR516B2-201ENST00000385190 85 ntBASIC0.64□□□□□ -2.31
KLHL28Q9NXS3 MIR628-201ENST00000385229 95 ntBASIC0.64□□□□□ -2.31
KLHL28Q9NXS3 MLLT10P1-201ENST00000418346 262 ntBASIC0.64□□□□□ -2.31
KLHL28Q9NXS3 AC099799.1-201ENST00000439809 192 ntBASIC0.64□□□□□ -2.31
KLHL28Q9NXS3 RPS20P10-201ENST00000451209 253 ntBASIC0.64□□□□□ -2.31
KLHL28Q9NXS3 Y_RNA.632-201ENST00000459189 102 ntBASIC0.64□□□□□ -2.31
KLHL28Q9NXS3 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC0.64□□□□□ -2.31
KLHL28Q9NXS3 AL355375.2-201ENST00000574825 175 ntBASIC0.64□□□□□ -2.31
KLHL28Q9NXS3 MIR4762-201ENST00000585261 75 ntBASIC0.64□□□□□ -2.31
KLHL28Q9NXS3 AL590095.2-201ENST00000604136 117 ntBASIC0.64□□□□□ -2.31
KLHL28Q9NXS3 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC0.64□□□□□ -2.31
KLHL28Q9NXS3 MIR4272-201ENST00000635924 64 ntBASIC0.64□□□□□ -2.31
KLHL28Q9NXS3 Y_RNA.27-201ENST00000362540 103 ntBASIC0.63□□□□□ -2.31
KLHL28Q9NXS3 U8.5-201ENST00000364528 136 ntBASIC0.63□□□□□ -2.31
KLHL28Q9NXS3 RNU6-1175P-201ENST00000365200 107 ntBASIC0.63□□□□□ -2.31
KLHL28Q9NXS3 Y_RNA.570-201ENST00000384750 101 ntBASIC0.63□□□□□ -2.31
KLHL28Q9NXS3 MIR522-201ENST00000385071 87 ntBASIC0.63□□□□□ -2.31
KLHL28Q9NXS3 AL035398.1-201ENST00000430869 322 ntBASIC0.63□□□□□ -2.31
KLHL28Q9NXS3 AC117454.1-201ENST00000491120 168 ntBASIC0.63□□□□□ -2.31
KLHL28Q9NXS3 RNU6-911P-201ENST00000516523 104 ntBASIC0.63□□□□□ -2.31
KLHL28Q9NXS3 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.63□□□□□ -2.31
KLHL28Q9NXS3 AC133104.2-201ENST00000615272 193 ntBASIC0.63□□□□□ -2.31
KLHL28Q9NXS3 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
KLHL28Q9NXS3 RNU6-1115P-201ENST00000362490 106 ntBASIC0.62□□□□□ -2.31
KLHL28Q9NXS3 Y_RNA.80-201ENST00000362996 102 ntBASIC0.62□□□□□ -2.31
KLHL28Q9NXS3 SNORD81.1-201ENST00000363064 77 ntBASIC0.62□□□□□ -2.31
KLHL28Q9NXS3 RNA5SP264-201ENST00000363115 107 ntBASIC0.62□□□□□ -2.31
KLHL28Q9NXS3 SNORD114-26-201ENST00000363543 72 ntBASIC0.62□□□□□ -2.31
KLHL28Q9NXS3 Y_RNA.384-201ENST00000383909 102 ntBASIC0.62□□□□□ -2.31
KLHL28Q9NXS3 Y_RNA.485-201ENST00000384395 102 ntBASIC0.62□□□□□ -2.31
KLHL28Q9NXS3 RNU6-110P-201ENST00000384508 104 ntBASIC0.62□□□□□ -2.31
KLHL28Q9NXS3 Y_RNA.529-201ENST00000384586 119 ntBASIC0.62□□□□□ -2.31
KLHL28Q9NXS3 MIR452-201ENST00000385020 85 ntBASIC0.62□□□□□ -2.31
KLHL28Q9NXS3 MIR216A-201ENST00000385063 110 ntBASIC0.62□□□□□ -2.31
KLHL28Q9NXS3 AL390729.2-201ENST00000416137 156 ntBASIC0.62□□□□□ -2.31
KLHL28Q9NXS3 MCFD2P1-201ENST00000417812 300 ntBASIC0.62□□□□□ -2.31
KLHL28Q9NXS3 COX6CP6-201ENST00000490840 228 ntBASIC0.62□□□□□ -2.31
KLHL28Q9NXS3 RNU6-507P-201ENST00000516045 100 ntBASIC0.62□□□□□ -2.31
KLHL28Q9NXS3 RNU6-875P-201ENST00000516488 106 ntBASIC0.62□□□□□ -2.31
KLHL28Q9NXS3 AP003716.2-201ENST00000528260 108 ntBASIC0.62□□□□□ -2.31
KLHL28Q9NXS3 AC093027.1-201ENST00000546698 429 ntBASIC0.62□□□□□ -2.31
KLHL28Q9NXS3 VN1R91P-201ENST00000594377 169 ntBASIC0.62□□□□□ -2.31
KLHL28Q9NXS3 AC005972.2-201ENST00000604690 348 ntBASIC0.62□□□□□ -2.31
KLHL28Q9NXS3 AC091925.1-201ENST00000623204 462 ntBASIC0.62□□□□□ -2.31
KLHL28Q9NXS3 SNORA25.3-201ENST00000363205 127 ntBASIC0.61□□□□□ -2.31
KLHL28Q9NXS3 Y_RNA.187-201ENST00000363918 113 ntBASIC0.61□□□□□ -2.31
KLHL28Q9NXS3 Y_RNA.230-201ENST00000364348 109 ntBASIC0.61□□□□□ -2.31
KLHL28Q9NXS3 SNORD50B-201ENST00000364995 70 ntBASIC0.61□□□□□ -2.31
KLHL28Q9NXS3 Y_RNA.393-201ENST00000383936 102 ntBASIC0.61□□□□□ -2.31
KLHL28Q9NXS3 Y_RNA.428-201ENST00000384078 102 ntBASIC0.61□□□□□ -2.31
KLHL28Q9NXS3 AL590004.1-201ENST00000405321 300 ntBASIC0.61□□□□□ -2.31
KLHL28Q9NXS3 MTND1P14-201ENST00000427400 950 ntBASIC0.61□□□□□ -2.31
KLHL28Q9NXS3 SNRPGP10-201ENST00000432323 225 ntBASIC0.61□□□□□ -2.31
KLHL28Q9NXS3 RNU7-152P-201ENST00000458982 64 ntBASIC0.61□□□□□ -2.31
KLHL28Q9NXS3 SNORD19B-201ENST00000459623 84 ntBASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 180.5 ms