Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 SNORD81.1-201ENST00000363064 77 ntBASIC1□□□□□ -2.25
DDX28Q9NUL7 Y_RNA.310-201ENST00000365063 113 ntBASIC1□□□□□ -2.25
DDX28Q9NUL7 Y_RNA.368-201ENST00000365547 113 ntBASIC1□□□□□ -2.25
DDX28Q9NUL7 Y_RNA.439-201ENST00000384119 94 ntBASIC1□□□□□ -2.25
DDX28Q9NUL7 Y_RNA.456-201ENST00000384232 111 ntBASIC1□□□□□ -2.25
DDX28Q9NUL7 MIR1298-201ENST00000408783 112 ntBASIC1□□□□□ -2.25
DDX28Q9NUL7 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1□□□□□ -2.25
DDX28Q9NUL7 MLLT10P1-201ENST00000418346 262 ntBASIC1□□□□□ -2.25
DDX28Q9NUL7 AC087343.1-201ENST00000477341 475 ntBASIC1□□□□□ -2.25
DDX28Q9NUL7 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1□□□□□ -2.25
DDX28Q9NUL7 Y_RNA.714-201ENST00000517065 90 ntBASIC1□□□□□ -2.25
DDX28Q9NUL7 MIR4295-201ENST00000585286 85 ntBASIC1□□□□□ -2.25
DDX28Q9NUL7 LARP7P1-201ENST00000605576 316 ntBASIC1□□□□□ -2.25
DDX28Q9NUL7 AL008636.1-201ENST00000625038 1018 ntBASIC1□□□□□ -2.25
DDX28Q9NUL7 AL391516.1-201ENST00000554380 2449 ntBASIC0.99□□□□□ -2.25
DDX28Q9NUL7 Y_RNA.80-201ENST00000362996 102 ntBASIC0.99□□□□□ -2.25
DDX28Q9NUL7 RNY1-201ENST00000364228 113 ntBASIC0.99□□□□□ -2.25
DDX28Q9NUL7 AC117470.1-201ENST00000381974 330 ntBASIC0.99□□□□□ -2.25
DDX28Q9NUL7 Y_RNA.485-201ENST00000384395 102 ntBASIC0.99□□□□□ -2.25
DDX28Q9NUL7 Y_RNA.551-201ENST00000384661 102 ntBASIC0.99□□□□□ -2.25
DDX28Q9NUL7 MIR19B1-201ENST00000384829 87 ntBASIC0.99□□□□□ -2.25
DDX28Q9NUL7 SNORD79.1-201ENST00000516069 84 ntBASIC0.99□□□□□ -2.25
DDX28Q9NUL7 RNU6-475P-201ENST00000516073 104 ntBASIC0.99□□□□□ -2.25
DDX28Q9NUL7 RNU7-110P-201ENST00000516891 62 ntBASIC0.99□□□□□ -2.25
DDX28Q9NUL7 AC006157.1-201ENST00000611750 366 ntBASIC0.99□□□□□ -2.25
DDX28Q9NUL7 Y_RNA.804-201ENST00000615262 101 ntBASIC0.99□□□□□ -2.25
DDX28Q9NUL7 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.98□□□□□ -2.25
DDX28Q9NUL7 Y_RNA.112-201ENST00000363250 102 ntBASIC0.98□□□□□ -2.25
DDX28Q9NUL7 RNU4-50P-201ENST00000364361 141 ntBASIC0.98□□□□□ -2.25
DDX28Q9NUL7 SNORA80D-201ENST00000384488 135 ntBASIC0.98□□□□□ -2.25
DDX28Q9NUL7 MIR136-201ENST00000385207 82 ntBASIC0.98□□□□□ -2.25
DDX28Q9NUL7 MTND1P14-201ENST00000427400 950 ntBASIC0.98□□□□□ -2.25
DDX28Q9NUL7 UBL5P1-201ENST00000507979 193 ntBASIC0.98□□□□□ -2.25
DDX28Q9NUL7 RNU6-1170P-201ENST00000515974 106 ntBASIC0.98□□□□□ -2.25
DDX28Q9NUL7 SNORD45.4-201ENST00000516629 73 ntBASIC0.98□□□□□ -2.25
DDX28Q9NUL7 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.98□□□□□ -2.25
DDX28Q9NUL7 POLR3GP1-201ENST00000594073 261 ntBASIC0.98□□□□□ -2.25
DDX28Q9NUL7 PRELID3BP2-201ENST00000605362 201 ntBASIC0.98□□□□□ -2.25
DDX28Q9NUL7 AL080274.1-201ENST00000605565 220 ntBASIC0.98□□□□□ -2.25
DDX28Q9NUL7 AL133255.1-201ENST00000606374 441 ntBASIC0.98□□□□□ -2.25
DDX28Q9NUL7 AC103810.9-201ENST00000606688 112 ntBASIC0.98□□□□□ -2.25
DDX28Q9NUL7 AL096861.1-201ENST00000610899 123 ntBASIC0.98□□□□□ -2.25
DDX28Q9NUL7 AC012676.2-201ENST00000619258 186 ntBASIC0.98□□□□□ -2.25
DDX28Q9NUL7 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.97□□□□□ -2.25
DDX28Q9NUL7 snoU2-30.1-201ENST00000365012 70 ntBASIC0.97□□□□□ -2.25
DDX28Q9NUL7 Y_RNA.363-201ENST00000365529 113 ntBASIC0.97□□□□□ -2.25
DDX28Q9NUL7 SNORD14.1-201ENST00000365609 90 ntBASIC0.97□□□□□ -2.25
DDX28Q9NUL7 RNU6-131P-201ENST00000391144 107 ntBASIC0.97□□□□□ -2.25
DDX28Q9NUL7 MIR1302-11-201ENST00000408051 138 ntBASIC0.97□□□□□ -2.25
DDX28Q9NUL7 MIR1302-9-201ENST00000408365 138 ntBASIC0.97□□□□□ -2.25
DDX28Q9NUL7 MIR1302-10-201ENST00000408734 138 ntBASIC0.97□□□□□ -2.25
DDX28Q9NUL7 AC063976.4-201ENST00000421971 163 ntBASIC0.97□□□□□ -2.25
DDX28Q9NUL7 SNRPGP10-201ENST00000432323 225 ntBASIC0.97□□□□□ -2.25
DDX28Q9NUL7 AC002429.1-201ENST00000437672 148 ntBASIC0.97□□□□□ -2.25
DDX28Q9NUL7 HMGN1P10-201ENST00000474557 553 ntBASIC0.97□□□□□ -2.25
DDX28Q9NUL7 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.97□□□□□ -2.25
DDX28Q9NUL7 SNORD111.1-201ENST00000516421 86 ntBASIC0.97□□□□□ -2.25
DDX28Q9NUL7 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.97□□□□□ -2.25
DDX28Q9NUL7 DEFB117-201ENST00000602356 141 ntBASIC0.97□□□□□ -2.25
DDX28Q9NUL7 AP003357.1-201ENST00000604497 148 ntBASIC0.97□□□□□ -2.25
DDX28Q9NUL7 MIR1302-2-201ENST00000607096 138 ntBASIC0.97□□□□□ -2.25
DDX28Q9NUL7 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC0.97□□□□□ -2.25
DDX28Q9NUL7 MIR6515-201ENST00000619843 57 ntBASIC0.97□□□□□ -2.25
DDX28Q9NUL7 MIR96-201ENST00000362288 78 ntBASIC0.96□□□□□ -2.26
DDX28Q9NUL7 Y_RNA.143-201ENST00000363520 106 ntBASIC0.96□□□□□ -2.26
DDX28Q9NUL7 SNORD114-27-201ENST00000363766 70 ntBASIC0.96□□□□□ -2.26
DDX28Q9NUL7 RNU6-1187P-201ENST00000364771 110 ntBASIC0.96□□□□□ -2.26
DDX28Q9NUL7 Y_RNA.395-201ENST00000383945 109 ntBASIC0.96□□□□□ -2.26
DDX28Q9NUL7 Y_RNA.471-201ENST00000384312 102 ntBASIC0.96□□□□□ -2.26
DDX28Q9NUL7 RNU6-937P-201ENST00000384325 106 ntBASIC0.96□□□□□ -2.26
DDX28Q9NUL7 RNU6-21P-201ENST00000384710 107 ntBASIC0.96□□□□□ -2.26
DDX28Q9NUL7 HMGN2P32-201ENST00000444648 269 ntBASIC0.96□□□□□ -2.26
DDX28Q9NUL7 RPL39P28-201ENST00000465655 155 ntBASIC0.96□□□□□ -2.26
DDX28Q9NUL7 AL117351.2-201ENST00000513571 157 ntBASIC0.96□□□□□ -2.26
DDX28Q9NUL7 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
DDX28Q9NUL7 AC040926.1-201ENST00000530195 238 ntBASIC0.96□□□□□ -2.26
DDX28Q9NUL7 uc_338.22-201ENST00000622722 187 ntBASIC0.96□□□□□ -2.26
DDX28Q9NUL7 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.96□□□□□ -2.26
DDX28Q9NUL7 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
DDX28Q9NUL7 SNORD50B-201ENST00000364995 70 ntBASIC0.95□□□□□ -2.26
DDX28Q9NUL7 Y_RNA.431-201ENST00000384086 102 ntBASIC0.95□□□□□ -2.26
DDX28Q9NUL7 MIR15B-201ENST00000385045 98 ntBASIC0.95□□□□□ -2.26
DDX28Q9NUL7 AL590004.1-201ENST00000405321 300 ntBASIC0.95□□□□□ -2.26
DDX28Q9NUL7 AC022028.1-201ENST00000412054 408 ntBASIC0.95□□□□□ -2.26
DDX28Q9NUL7 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.95□□□□□ -2.26
DDX28Q9NUL7 AC245047.8-201ENST00000456455 284 ntBASIC0.95□□□□□ -2.26
DDX28Q9NUL7 RPS29P1-201ENST00000465274 159 ntBASIC0.95□□□□□ -2.26
DDX28Q9NUL7 SNORA74.3-201ENST00000517108 154 ntBASIC0.95□□□□□ -2.26
DDX28Q9NUL7 RNU6-1223P-201ENST00000517124 104 ntBASIC0.95□□□□□ -2.26
DDX28Q9NUL7 AC090142.3-201ENST00000519012 385 ntBASIC0.95□□□□□ -2.26
DDX28Q9NUL7 AP001094.1-201ENST00000579805 193 ntBASIC0.95□□□□□ -2.26
DDX28Q9NUL7 MIR3192-201ENST00000584920 77 ntBASIC0.95□□□□□ -2.26
DDX28Q9NUL7 AL391903.3-201ENST00000612158 163 ntBASIC0.95□□□□□ -2.26
DDX28Q9NUL7 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.95□□□□□ -2.26
DDX28Q9NUL7 AC007742.2-201ENST00000618226 398 ntBASIC0.95□□□□□ -2.26
DDX28Q9NUL7 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
DDX28Q9NUL7 RNU1-93P-201ENST00000364704 169 ntBASIC0.94□□□□□ -2.26
DDX28Q9NUL7 MIR520E-201ENST00000384867 87 ntBASIC0.94□□□□□ -2.26
DDX28Q9NUL7 MIR516B2-201ENST00000385190 85 ntBASIC0.94□□□□□ -2.26
DDX28Q9NUL7 RNU4-30P-201ENST00000410245 143 ntBASIC0.94□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 489.7 ms