Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 U8.5-201ENST00000364528 136 ntBASIC2.39□□□□□ -2.03
TRIM39Q9HCM9 Y_RNA.272-201ENST00000364696 102 ntBASIC2.39□□□□□ -2.03
TRIM39Q9HCM9 MIR522-201ENST00000385071 87 ntBASIC2.39□□□□□ -2.03
TRIM39Q9HCM9 SNORA12.1-201ENST00000390873 148 ntBASIC2.39□□□□□ -2.03
TRIM39Q9HCM9 RNU6-239P-201ENST00000390990 99 ntBASIC2.39□□□□□ -2.03
TRIM39Q9HCM9 AL603908.1-201ENST00000406098 201 ntBASIC2.39□□□□□ -2.03
TRIM39Q9HCM9 RPL30P13-201ENST00000418873 348 ntBASIC2.39□□□□□ -2.03
TRIM39Q9HCM9 RNA5SP57-201ENST00000459463 123 ntBASIC2.39□□□□□ -2.03
TRIM39Q9HCM9 RPL23AP63-201ENST00000498752 471 ntBASIC2.39□□□□□ -2.03
TRIM39Q9HCM9 MIR6895-201ENST00000613497 78 ntBASIC2.39□□□□□ -2.03
TRIM39Q9HCM9 Pinc.1-201ENST00000616452 154 ntBASIC2.39□□□□□ -2.03
TRIM39Q9HCM9 MIR1291-201ENST00000627649 87 ntBASIC2.39□□□□□ -2.03
TRIM39Q9HCM9 MTND1P7-201ENST00000632801 297 ntBASIC2.39□□□□□ -2.03
TRIM39Q9HCM9 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
TRIM39Q9HCM9 Y_RNA.337-201ENST00000365312 102 ntBASIC2.38□□□□□ -2.03
TRIM39Q9HCM9 RNU2-70P-201ENST00000410718 179 ntBASIC2.38□□□□□ -2.03
TRIM39Q9HCM9 RNU5E-9P-201ENST00000411164 104 ntBASIC2.38□□□□□ -2.03
TRIM39Q9HCM9 AC006461.1-201ENST00000412637 326 ntBASIC2.38□□□□□ -2.03
TRIM39Q9HCM9 RNA5SP24-201ENST00000516478 95 ntBASIC2.38□□□□□ -2.03
TRIM39Q9HCM9 RNA5SP153-201ENST00000516498 76 ntBASIC2.38□□□□□ -2.03
TRIM39Q9HCM9 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC2.38□□□□□ -2.03
TRIM39Q9HCM9 AL160236.1-201ENST00000556317 195 ntBASIC2.38□□□□□ -2.03
TRIM39Q9HCM9 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC2.38□□□□□ -2.03
TRIM39Q9HCM9 MIR4709-201ENST00000577272 72 ntBASIC2.38□□□□□ -2.03
TRIM39Q9HCM9 MIR5694-201ENST00000581190 76 ntBASIC2.38□□□□□ -2.03
TRIM39Q9HCM9 MIR4762-201ENST00000585261 75 ntBASIC2.38□□□□□ -2.03
TRIM39Q9HCM9 AC104465.1-201ENST00000611365 139 ntBASIC2.38□□□□□ -2.03
TRIM39Q9HCM9 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.37□□□□□ -2.03
TRIM39Q9HCM9 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.37□□□□□ -2.03
TRIM39Q9HCM9 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
TRIM39Q9HCM9 snoU2-30.1-201ENST00000365012 70 ntBASIC2.37□□□□□ -2.03
TRIM39Q9HCM9 RNU6-296P-201ENST00000384608 107 ntBASIC2.37□□□□□ -2.03
TRIM39Q9HCM9 MIR548M-201ENST00000408260 86 ntBASIC2.37□□□□□ -2.03
TRIM39Q9HCM9 RNU6-394P-201ENST00000410735 107 ntBASIC2.37□□□□□ -2.03
TRIM39Q9HCM9 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.37□□□□□ -2.03
TRIM39Q9HCM9 SNRPGP8-201ENST00000454064 226 ntBASIC2.37□□□□□ -2.03
TRIM39Q9HCM9 snoU13.27-201ENST00000459278 104 ntBASIC2.37□□□□□ -2.03
TRIM39Q9HCM9 RNU7-34P-201ENST00000459394 64 ntBASIC2.37□□□□□ -2.03
TRIM39Q9HCM9 NDUFA4P2-201ENST00000489989 244 ntBASIC2.37□□□□□ -2.03
TRIM39Q9HCM9 AC234781.5-201ENST00000508429 271 ntBASIC2.37□□□□□ -2.03
TRIM39Q9HCM9 AC026436.1-201ENST00000510537 270 ntBASIC2.37□□□□□ -2.03
TRIM39Q9HCM9 RNU6-197P-201ENST00000516680 100 ntBASIC2.37□□□□□ -2.03
TRIM39Q9HCM9 MIR3144-201ENST00000579460 79 ntBASIC2.37□□□□□ -2.03
TRIM39Q9HCM9 Y_RNA.8-201ENST00000362353 102 ntBASIC2.36□□□□□ -2.03
TRIM39Q9HCM9 SNORD14E-201ENST00000364009 85 ntBASIC2.36□□□□□ -2.03
TRIM39Q9HCM9 RNU6-449P-201ENST00000383914 107 ntBASIC2.36□□□□□ -2.03
TRIM39Q9HCM9 RNA5SP100-201ENST00000410903 110 ntBASIC2.36□□□□□ -2.03
TRIM39Q9HCM9 RNA5SP59-201ENST00000410922 110 ntBASIC2.36□□□□□ -2.03
TRIM39Q9HCM9 AL158823.1-201ENST00000418441 478 ntBASIC2.36□□□□□ -2.03
TRIM39Q9HCM9 HMGN2P32-201ENST00000444648 269 ntBASIC2.36□□□□□ -2.03
TRIM39Q9HCM9 SNORA31.10-201ENST00000516482 106 ntBASIC2.36□□□□□ -2.03
TRIM39Q9HCM9 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.36□□□□□ -2.03
TRIM39Q9HCM9 RNA5SP437-201ENST00000517249 129 ntBASIC2.36□□□□□ -2.03
TRIM39Q9HCM9 AC008507.4-201ENST00000585464 127 ntBASIC2.36□□□□□ -2.03
TRIM39Q9HCM9 AC103810.6-201ENST00000606708 136 ntBASIC2.36□□□□□ -2.03
TRIM39Q9HCM9 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.36□□□□□ -2.03
TRIM39Q9HCM9 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.36□□□□□ -2.03
TRIM39Q9HCM9 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.36□□□□□ -2.03
TRIM39Q9HCM9 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
TRIM39Q9HCM9 Y_RNA.521-201ENST00000384560 114 ntBASIC2.35□□□□□ -2.03
TRIM39Q9HCM9 RNU6-1031P-201ENST00000384773 107 ntBASIC2.35□□□□□ -2.03
TRIM39Q9HCM9 Y_RNA.580-201ENST00000391004 95 ntBASIC2.35□□□□□ -2.03
TRIM39Q9HCM9 RNA5SP212-201ENST00000391223 107 ntBASIC2.35□□□□□ -2.03
TRIM39Q9HCM9 HSPE1P9-201ENST00000440046 311 ntBASIC2.35□□□□□ -2.03
TRIM39Q9HCM9 RNU6-561P-201ENST00000516222 102 ntBASIC2.35□□□□□ -2.03
TRIM39Q9HCM9 AC067747.1-201ENST00000608026 250 ntBASIC2.35□□□□□ -2.03
TRIM39Q9HCM9 AC046143.2-201ENST00000609789 160 ntBASIC2.35□□□□□ -2.03
TRIM39Q9HCM9 ZNF702P-202ENST00000434269 1966 ntBASIC2.35□□□□□ -2.03
TRIM39Q9HCM9 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.35□□□□□ -2.03
TRIM39Q9HCM9 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
TRIM39Q9HCM9 RNA5SP289-201ENST00000362332 137 ntBASIC2.34□□□□□ -2.03
TRIM39Q9HCM9 SNORD114-30-201ENST00000364448 72 ntBASIC2.34□□□□□ -2.03
TRIM39Q9HCM9 RNU6-442P-201ENST00000383968 104 ntBASIC2.34□□□□□ -2.03
TRIM39Q9HCM9 RNU6-484P-201ENST00000384016 107 ntBASIC2.34□□□□□ -2.03
TRIM39Q9HCM9 RNU6-804P-201ENST00000384286 107 ntBASIC2.34□□□□□ -2.03
TRIM39Q9HCM9 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.34□□□□□ -2.03
TRIM39Q9HCM9 CYCTP-201ENST00000504253 315 ntBASIC2.34□□□□□ -2.03
TRIM39Q9HCM9 MRPS17P9-201ENST00000511924 393 ntBASIC2.34□□□□□ -2.03
TRIM39Q9HCM9 RNU6-365P-201ENST00000517113 106 ntBASIC2.34□□□□□ -2.03
TRIM39Q9HCM9 MIR4435-1-201ENST00000582552 80 ntBASIC2.34□□□□□ -2.03
TRIM39Q9HCM9 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.04
TRIM39Q9HCM9 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.34□□□□□ -2.04
TRIM39Q9HCM9 SNORA4.2-201ENST00000365313 147 ntBASIC2.33□□□□□ -2.04
TRIM39Q9HCM9 SNORD116-18-201ENST00000383961 92 ntBASIC2.33□□□□□ -2.04
TRIM39Q9HCM9 RNU6-163P-201ENST00000384396 106 ntBASIC2.33□□□□□ -2.04
TRIM39Q9HCM9 RNA5SP508-201ENST00000411327 119 ntBASIC2.33□□□□□ -2.04
TRIM39Q9HCM9 SNORD116-25-201ENST00000516517 92 ntBASIC2.33□□□□□ -2.04
TRIM39Q9HCM9 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.33□□□□□ -2.04
TRIM39Q9HCM9 MIR4287-201ENST00000579398 78 ntBASIC2.33□□□□□ -2.04
TRIM39Q9HCM9 MIR378D2-201ENST00000580636 98 ntBASIC2.33□□□□□ -2.04
TRIM39Q9HCM9 AC120024.3-201ENST00000603167 156 ntBASIC2.33□□□□□ -2.04
TRIM39Q9HCM9 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.33□□□□□ -2.04
TRIM39Q9HCM9 AC021753.1-201ENST00000635724 168 ntBASIC2.33□□□□□ -2.04
TRIM39Q9HCM9 AC005336.3-201ENST00000623833 2679 ntBASIC2.32□□□□□ -2.04
TRIM39Q9HCM9 MIR21-201ENST00000362134 72 ntBASIC2.32□□□□□ -2.04
TRIM39Q9HCM9 RNA5SP276-201ENST00000362580 94 ntBASIC2.32□□□□□ -2.04
TRIM39Q9HCM9 Y_RNA.336-201ENST00000365307 109 ntBASIC2.32□□□□□ -2.04
TRIM39Q9HCM9 RNU6-360P-201ENST00000390944 104 ntBASIC2.32□□□□□ -2.04
TRIM39Q9HCM9 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.32□□□□□ -2.04
TRIM39Q9HCM9 SNORD45.4-201ENST00000516629 73 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms