Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 RNY3-201ENST00000365484 102 ntBASIC1.2□□□□□ -2.22
CHMP4AQ9BY43 AC117470.1-201ENST00000381974 330 ntBASIC1.2□□□□□ -2.22
CHMP4AQ9BY43 Y_RNA.496-201ENST00000384444 101 ntBASIC1.2□□□□□ -2.22
CHMP4AQ9BY43 RNU6-110P-201ENST00000384508 104 ntBASIC1.2□□□□□ -2.22
CHMP4AQ9BY43 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.2□□□□□ -2.22
CHMP4AQ9BY43 FGF7P4-201ENST00000509595 295 ntBASIC1.2□□□□□ -2.22
CHMP4AQ9BY43 RNU6-197P-201ENST00000516680 100 ntBASIC1.2□□□□□ -2.22
CHMP4AQ9BY43 RNU11-2P-201ENST00000516898 142 ntBASIC1.2□□□□□ -2.22
CHMP4AQ9BY43 SNORA74.3-201ENST00000517108 154 ntBASIC1.2□□□□□ -2.22
CHMP4AQ9BY43 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.19□□□□□ -2.22
CHMP4AQ9BY43 RNU6-1115P-201ENST00000362490 106 ntBASIC1.19□□□□□ -2.22
CHMP4AQ9BY43 RNA5SP264-201ENST00000363115 107 ntBASIC1.19□□□□□ -2.22
CHMP4AQ9BY43 SNORA72-201ENST00000384339 132 ntBASIC1.19□□□□□ -2.22
CHMP4AQ9BY43 MIR522-201ENST00000385071 87 ntBASIC1.19□□□□□ -2.22
CHMP4AQ9BY43 RNU6-710P-201ENST00000410424 105 ntBASIC1.19□□□□□ -2.22
CHMP4AQ9BY43 AL390729.2-201ENST00000416137 156 ntBASIC1.19□□□□□ -2.22
CHMP4AQ9BY43 MTND1P14-201ENST00000427400 950 ntBASIC1.19□□□□□ -2.22
CHMP4AQ9BY43 RNU7-152P-201ENST00000458982 64 ntBASIC1.19□□□□□ -2.22
CHMP4AQ9BY43 MIR5188-201ENST00000583467 113 ntBASIC1.19□□□□□ -2.22
CHMP4AQ9BY43 AL136317.1-201ENST00000612653 226 ntBASIC1.19□□□□□ -2.22
CHMP4AQ9BY43 Y_RNA.263-201ENST00000364659 114 ntBASIC1.18□□□□□ -2.22
CHMP4AQ9BY43 Y_RNA.341-201ENST00000365341 102 ntBASIC1.18□□□□□ -2.22
CHMP4AQ9BY43 SNORD14.1-201ENST00000365609 90 ntBASIC1.18□□□□□ -2.22
CHMP4AQ9BY43 SNORA75.2-201ENST00000391138 150 ntBASIC1.18□□□□□ -2.22
CHMP4AQ9BY43 SNORA75.3-201ENST00000391231 150 ntBASIC1.18□□□□□ -2.22
CHMP4AQ9BY43 AL160004.2-201ENST00000432935 350 ntBASIC1.18□□□□□ -2.22
CHMP4AQ9BY43 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC1.18□□□□□ -2.22
CHMP4AQ9BY43 MTND5P20-201ENST00000448677 143 ntBASIC1.18□□□□□ -2.22
CHMP4AQ9BY43 PSMC1P5-201ENST00000512850 177 ntBASIC1.18□□□□□ -2.22
CHMP4AQ9BY43 ACA64.5-201ENST00000516207 127 ntBASIC1.18□□□□□ -2.22
CHMP4AQ9BY43 SNORD45.4-201ENST00000516629 73 ntBASIC1.18□□□□□ -2.22
CHMP4AQ9BY43 RNU7-110P-201ENST00000516891 62 ntBASIC1.18□□□□□ -2.22
CHMP4AQ9BY43 MIR548S-201ENST00000581352 82 ntBASIC1.18□□□□□ -2.22
CHMP4AQ9BY43 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.18□□□□□ -2.22
CHMP4AQ9BY43 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.18□□□□□ -2.22
CHMP4AQ9BY43 AC112487.2-201ENST00000637950 304 ntBASIC1.18□□□□□ -2.22
CHMP4AQ9BY43 MIR96-201ENST00000362288 78 ntBASIC1.17□□□□□ -2.22
CHMP4AQ9BY43 Y_RNA.370-201ENST00000365589 108 ntBASIC1.17□□□□□ -2.22
CHMP4AQ9BY43 RNU6-131P-201ENST00000391144 107 ntBASIC1.17□□□□□ -2.22
CHMP4AQ9BY43 SNRPGP10-201ENST00000432323 225 ntBASIC1.17□□□□□ -2.22
CHMP4AQ9BY43 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC1.17□□□□□ -2.22
CHMP4AQ9BY43 RNU4-77P-201ENST00000516692 156 ntBASIC1.17□□□□□ -2.22
CHMP4AQ9BY43 MIR3192-201ENST00000584920 77 ntBASIC1.17□□□□□ -2.22
CHMP4AQ9BY43 DEFB117-201ENST00000602356 141 ntBASIC1.17□□□□□ -2.22
CHMP4AQ9BY43 AC011373.1-201ENST00000607270 237 ntBASIC1.17□□□□□ -2.22
CHMP4AQ9BY43 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.17□□□□□ -2.22
CHMP4AQ9BY43 SEPT14P17-201ENST00000617978 177 ntBASIC1.17□□□□□ -2.22
CHMP4AQ9BY43 AL138825.1-201ENST00000618587 192 ntBASIC1.17□□□□□ -2.22
CHMP4AQ9BY43 MIR103A2-201ENST00000362154 78 ntBASIC1.16□□□□□ -2.22
CHMP4AQ9BY43 Y_RNA.80-201ENST00000362996 102 ntBASIC1.16□□□□□ -2.22
CHMP4AQ9BY43 snoU2-30.1-201ENST00000365012 70 ntBASIC1.16□□□□□ -2.22
CHMP4AQ9BY43 Y_RNA.485-201ENST00000384395 102 ntBASIC1.16□□□□□ -2.22
CHMP4AQ9BY43 Y_RNA.702-201ENST00000516843 96 ntBASIC1.16□□□□□ -2.22
CHMP4AQ9BY43 MIR4801-201ENST00000582704 82 ntBASIC1.16□□□□□ -2.22
CHMP4AQ9BY43 AC010205.1-201ENST00000616668 449 ntBASIC1.16□□□□□ -2.22
CHMP4AQ9BY43 AL606534.2-204ENST00000635008 178 ntBASIC1.16□□□□□ -2.22
CHMP4AQ9BY43 SNORD114-22-201ENST00000365423 72 ntBASIC1.15□□□□□ -2.23
CHMP4AQ9BY43 Y_RNA.458-201ENST00000384240 102 ntBASIC1.15□□□□□ -2.23
CHMP4AQ9BY43 MIR520C-201ENST00000385005 87 ntBASIC1.15□□□□□ -2.23
CHMP4AQ9BY43 AL590004.1-201ENST00000405321 300 ntBASIC1.15□□□□□ -2.23
CHMP4AQ9BY43 AC024067.1-201ENST00000426199 223 ntBASIC1.15□□□□□ -2.23
CHMP4AQ9BY43 SNORA18.7-201ENST00000516910 131 ntBASIC1.15□□□□□ -2.23
CHMP4AQ9BY43 AC087685.1-201ENST00000587507 141 ntBASIC1.15□□□□□ -2.23
CHMP4AQ9BY43 POLR3GP1-201ENST00000594073 261 ntBASIC1.15□□□□□ -2.23
CHMP4AQ9BY43 AC091925.1-201ENST00000623204 462 ntBASIC1.15□□□□□ -2.23
CHMP4AQ9BY43 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
CHMP4AQ9BY43 Y_RNA.252-201ENST00000364556 101 ntBASIC1.14□□□□□ -2.23
CHMP4AQ9BY43 AC067940.1-201ENST00000458411 300 ntBASIC1.14□□□□□ -2.23
CHMP4AQ9BY43 U7.7-201ENST00000459276 60 ntBASIC1.14□□□□□ -2.23
CHMP4AQ9BY43 RNU6-976P-201ENST00000516086 111 ntBASIC1.14□□□□□ -2.23
CHMP4AQ9BY43 MIR3145-201ENST00000580727 82 ntBASIC1.14□□□□□ -2.23
CHMP4AQ9BY43 MIR4423-201ENST00000580922 80 ntBASIC1.14□□□□□ -2.23
CHMP4AQ9BY43 AL121655.1-201ENST00000605811 308 ntBASIC1.14□□□□□ -2.23
CHMP4AQ9BY43 Y_RNA.5-201ENST00000362334 102 ntBASIC1.13□□□□□ -2.23
CHMP4AQ9BY43 Y_RNA.439-201ENST00000384119 94 ntBASIC1.13□□□□□ -2.23
CHMP4AQ9BY43 Y_RNA.462-201ENST00000384268 102 ntBASIC1.13□□□□□ -2.23
CHMP4AQ9BY43 RNU6-937P-201ENST00000384325 106 ntBASIC1.13□□□□□ -2.23
CHMP4AQ9BY43 RNU6-21P-201ENST00000384710 107 ntBASIC1.13□□□□□ -2.23
CHMP4AQ9BY43 RNU4-30P-201ENST00000410245 143 ntBASIC1.13□□□□□ -2.23
CHMP4AQ9BY43 snoU13.25-201ENST00000458945 104 ntBASIC1.13□□□□□ -2.23
CHMP4AQ9BY43 SNORD58B-201ENST00000607313 66 ntBASIC1.13□□□□□ -2.23
CHMP4AQ9BY43 AC006157.1-201ENST00000611750 366 ntBASIC1.13□□□□□ -2.23
CHMP4AQ9BY43 Y_RNA.804-201ENST00000615262 101 ntBASIC1.13□□□□□ -2.23
CHMP4AQ9BY43 MIR6767-201ENST00000637302 66 ntBASIC1.13□□□□□ -2.23
CHMP4AQ9BY43 SNORD81.1-201ENST00000363064 77 ntBASIC1.12□□□□□ -2.23
CHMP4AQ9BY43 Y_RNA.143-201ENST00000363520 106 ntBASIC1.12□□□□□ -2.23
CHMP4AQ9BY43 SNORD114-27-201ENST00000363766 70 ntBASIC1.12□□□□□ -2.23
CHMP4AQ9BY43 Y_RNA.242-201ENST00000364473 110 ntBASIC1.12□□□□□ -2.23
CHMP4AQ9BY43 SNORD50B-201ENST00000364995 70 ntBASIC1.12□□□□□ -2.23
CHMP4AQ9BY43 Y_RNA.310-201ENST00000365063 113 ntBASIC1.12□□□□□ -2.23
CHMP4AQ9BY43 Y_RNA.330-201ENST00000365230 109 ntBASIC1.12□□□□□ -2.23
CHMP4AQ9BY43 RNU1-115P-201ENST00000365329 160 ntBASIC1.12□□□□□ -2.23
CHMP4AQ9BY43 RNU6-1323P-201ENST00000384025 107 ntBASIC1.12□□□□□ -2.23
CHMP4AQ9BY43 MIR146A-201ENST00000385201 99 ntBASIC1.12□□□□□ -2.23
CHMP4AQ9BY43 AF228730.4-201ENST00000421457 183 ntBASIC1.12□□□□□ -2.23
CHMP4AQ9BY43 AC117454.1-201ENST00000491120 168 ntBASIC1.12□□□□□ -2.23
CHMP4AQ9BY43 RPL23AP54-201ENST00000495129 419 ntBASIC1.12□□□□□ -2.23
CHMP4AQ9BY43 SNORA40.14-201ENST00000516543 86 ntBASIC1.12□□□□□ -2.23
CHMP4AQ9BY43 RNU7-116P-201ENST00000516940 62 ntBASIC1.12□□□□□ -2.23
CHMP4AQ9BY43 AC104465.1-201ENST00000611365 139 ntBASIC1.12□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms