| HOOK3 | Q86VS8 | AC104985.2-201 | ENST00000620598 | 500 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | CCDC14-221 | ENST00000489746 | 6476 nt | APPRIS ALT2 TSL 1 (best) BASIC | 0.96 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | RNA5SP264-201 | ENST00000363115 | 107 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | Y_RNA.458-201 | ENST00000384240 | 102 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | RNU6-1009P-201 | ENST00000390996 | 107 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | RNA5SP247-201 | ENST00000411181 | 105 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | AC024067.1-201 | ENST00000426199 | 223 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | RNU6-976P-201 | ENST00000516086 | 111 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | RNU6-113P-201 | ENST00000516653 | 101 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | AC024382.1-201 | ENST00000520224 | 292 nt | TSL 3 BASIC | 0.95 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | AP003716.2-201 | ENST00000528260 | 108 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | RPS29P30-201 | ENST00000600975 | 111 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | AL606534.2-204 | ENST00000635008 | 178 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | SNORD81.1-201 | ENST00000363064 | 77 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | Y_RNA.224-201 | ENST00000364308 | 111 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | SNORD50B-201 | ENST00000364995 | 70 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | RNU1-36P-201 | ENST00000365130 | 165 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | SNORD14.1-201 | ENST00000365609 | 90 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | Y_RNA.529-201 | ENST00000384586 | 119 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | MIR520C-201 | ENST00000385005 | 87 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | AF228730.4-201 | ENST00000421457 | 183 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | AL160004.2-201 | ENST00000432935 | 350 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | Y_RNA.661-201 | ENST00000516003 | 99 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | POLR3GP1-201 | ENST00000594073 | 261 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | DEFB117-201 | ENST00000602356 | 141 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | AC011373.1-201 | ENST00000607270 | 237 nt | BASIC | 0.94 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | MIR1287-201 | ENST00000408492 | 90 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | RNU7-43P-201 | ENST00000516554 | 64 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | MIR4452-201 | ENST00000583004 | 71 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | AC013244.2-201 | ENST00000603396 | 103 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | AC136443.5-201 | ENST00000603741 | 370 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | AP003357.1-201 | ENST00000604497 | 148 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | TEX15-201 | ENST00000256246 | 10110 nt | TSL 1 (best) BASIC | 0.92 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | MIR103A2-201 | ENST00000362154 | 78 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | Y_RNA.5-201 | ENST00000362334 | 102 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | SNORD63-201 | ENST00000384262 | 68 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | Y_RNA.526-201 | ENST00000384572 | 110 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | MIR146A-201 | ENST00000385201 | 99 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | MIR942-201 | ENST00000401111 | 86 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | AL590004.1-201 | ENST00000405321 | 300 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | RNU7-41P-201 | ENST00000515917 | 61 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | RNU7-110P-201 | ENST00000516891 | 62 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | SNORA18.7-201 | ENST00000516910 | 131 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | Y_RNA.713-201 | ENST00000517013 | 96 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | AC093027.1-201 | ENST00000546698 | 429 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | MIR4764-201 | ENST00000580680 | 88 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | SNORD58B-201 | ENST00000607313 | 66 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | MIR6857-201 | ENST00000613267 | 93 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | AC007742.2-201 | ENST00000618226 | 398 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | HIF1A-204 | ENST00000539097 | 3956 nt | TSL 1 (best) BASIC | 0.92 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | SNORD114-2-201 | ENST00000363953 | 78 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | RNA5SP48-201 | ENST00000363969 | 126 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | Y_RNA.203-201 | ENST00000364106 | 102 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | Y_RNA.226-201 | ENST00000364337 | 114 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | Y_RNA.356-201 | ENST00000365475 | 113 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | Y_RNA.551-201 | ENST00000384661 | 102 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | MTND5P20-201 | ENST00000448677 | 143 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | LINC01755-201 | ENST00000455010 | 453 nt | TSL 2 BASIC | 0.91 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | SNORD123-201 | ENST00000459473 | 70 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | AC024405.2-202 | ENST00000532731 | 184 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | C18orf54-203 | ENST00000578138 | 776 nt | TSL 3 BASIC | 0.91 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | MIR4653-201 | ENST00000585107 | 83 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | AC087685.1-201 | ENST00000587507 | 141 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | AC211469.2-201 | ENST00000605461 | 205 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | AL442644.1-201 | ENST00000454390 | 3105 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | ZNF260-205 | ENST00000593142 | 4047 nt | APPRIS P1 TSL 1 (best) BASIC | 0.9 | □□□□□ -2.26 | | |
| HOOK3 | Q86VS8 | SNORD14E-201 | ENST00000364009 | 85 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | Y_RNA.439-201 | ENST00000384119 | 94 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | MIR532-201 | ENST00000385025 | 91 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | MTND1P14-201 | ENST00000427400 | 950 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | U8.20-201 | ENST00000459445 | 131 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | HMGN1P10-201 | ENST00000474557 | 553 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | ACA64.5-201 | ENST00000516207 | 127 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | RNU7-115P-201 | ENST00000516433 | 55 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | AC127455.1-201 | ENST00000565496 | 145 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | AC092071.1-201 | ENST00000597260 | 549 nt | TSL 5 BASIC | 0.9 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | AL078603.1-201 | ENST00000603824 | 313 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | SEPT14P17-201 | ENST00000617978 | 177 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | SENP7-207 | ENST00000394095 | 4945 nt | APPRIS P3 TSL 1 (best) BASIC | 0.89 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | HSBP1P2-201 | ENST00000299671 | 229 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | SNORD114-22-201 | ENST00000365423 | 72 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | MIR1185-1-201 | ENST00000408598 | 86 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | RPL23AP54-201 | ENST00000495129 | 419 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | RNU6-507P-201 | ENST00000516045 | 100 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | Y_RNA.702-201 | ENST00000516843 | 96 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | MIR4801-201 | ENST00000582704 | 82 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | JPX_2.1-201 | ENST00000614161 | 69 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | MIR548AY-201 | ENST00000617669 | 107 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | C9orf84-205 | ENST00000394779 | 5060 nt | APPRIS ALT2 TSL 2 BASIC | 0.88 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | MIR96-201 | ENST00000362288 | 78 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | Y_RNA.58-201 | ENST00000362807 | 102 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | SNORA25.3-201 | ENST00000363205 | 127 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | Y_RNA.154-201 | ENST00000363624 | 102 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | U8.7-201 | ENST00000364940 | 136 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | RNY3P1-201 | ENST00000365085 | 102 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | Y_RNA.315-201 | ENST00000365117 | 102 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | Y_RNA.330-201 | ENST00000365230 | 109 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | RNY3-201 | ENST00000365484 | 102 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | RNU6-937P-201 | ENST00000384325 | 106 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| HOOK3 | Q86VS8 | RNU6-21P-201 | ENST00000384710 | 107 nt | BASIC | 0.88 | □□□□□ -2.27 | | |