Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC138869.1-201ENST00000568623 124 ntBASIC-0.2□□□□□ -2.44
CCDC88AQ3V6T2 AC124303.1-201ENST00000605703 360 ntBASIC-0.2□□□□□ -2.44
CCDC88AQ3V6T2 MIR8055-201ENST00000610739 97 ntBASIC-0.2□□□□□ -2.44
CCDC88AQ3V6T2 DLEU2_5.1-201ENST00000615567 84 ntBASIC-0.2□□□□□ -2.44
CCDC88AQ3V6T2 AC127459.3-201ENST00000624328 466 ntBASIC-0.2□□□□□ -2.44
CCDC88AQ3V6T2 SNORD38B-201ENST00000384690 67 ntBASIC-0.2□□□□□ -2.44
CCDC88AQ3V6T2 RNU6-679P-201ENST00000391003 106 ntBASIC-0.2□□□□□ -2.44
CCDC88AQ3V6T2 MIR548H2-201ENST00000408874 88 ntBASIC-0.2□□□□□ -2.44
CCDC88AQ3V6T2 RBM11P1-201ENST00000604951 799 ntBASIC-0.2□□□□□ -2.44
CCDC88AQ3V6T2 AC087752.4-201ENST00000605911 462 ntBASIC-0.2□□□□□ -2.44
CCDC88AQ3V6T2 SNORD38B-202ENST00000625943 69 ntBASIC-0.2□□□□□ -2.44
CCDC88AQ3V6T2 MIR409-201ENST00000362237 79 ntBASIC-0.21□□□□□ -2.44
CCDC88AQ3V6T2 AC092447.3-201ENST00000426027 686 ntBASIC-0.21□□□□□ -2.44
CCDC88AQ3V6T2 RNU7-159P-201ENST00000459284 62 ntBASIC-0.21□□□□□ -2.44
CCDC88AQ3V6T2 SNORD45.4-201ENST00000516629 73 ntBASIC-0.21□□□□□ -2.44
CCDC88AQ3V6T2 RNA5SP94-201ENST00000516917 108 ntBASIC-0.21□□□□□ -2.44
CCDC88AQ3V6T2 MIR4791-201ENST00000607666 84 ntBASIC-0.21□□□□□ -2.44
CCDC88AQ3V6T2 AC022960.3-201ENST00000619794 441 ntBASIC-0.21□□□□□ -2.44
CCDC88AQ3V6T2 MIR604-201ENST00000384880 94 ntBASIC-0.22□□□□□ -2.44
CCDC88AQ3V6T2 SNORD28B-201ENST00000390993 75 ntBASIC-0.22□□□□□ -2.44
CCDC88AQ3V6T2 MLLT10P1-201ENST00000418346 262 ntBASIC-0.22□□□□□ -2.44
CCDC88AQ3V6T2 AL139396.1-201ENST00000421137 167 ntBASIC-0.22□□□□□ -2.44
CCDC88AQ3V6T2 AL512326.2-201ENST00000426359 151 ntBASIC-0.22□□□□□ -2.44
CCDC88AQ3V6T2 AL353997.1-201ENST00000432936 108 ntBASIC-0.22□□□□□ -2.44
CCDC88AQ3V6T2 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC-0.22□□□□□ -2.44
CCDC88AQ3V6T2 SNORD123-201ENST00000459473 70 ntBASIC-0.22□□□□□ -2.44
CCDC88AQ3V6T2 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC-0.22□□□□□ -2.44
CCDC88AQ3V6T2 AC012433.1-201ENST00000588916 398 ntBASIC-0.22□□□□□ -2.44
CCDC88AQ3V6T2 RNU6-269P-201ENST00000391077 97 ntBASIC-0.22□□□□□ -2.45
CCDC88AQ3V6T2 RNA5SP496-201ENST00000391240 109 ntBASIC-0.22□□□□□ -2.45
CCDC88AQ3V6T2 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC-0.22□□□□□ -2.45
CCDC88AQ3V6T2 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC-0.22□□□□□ -2.45
CCDC88AQ3V6T2 AC005042.3-201ENST00000453230 174 ntBASIC-0.22□□□□□ -2.45
CCDC88AQ3V6T2 MTND2P39-201ENST00000457230 764 ntBASIC-0.22□□□□□ -2.45
CCDC88AQ3V6T2 RNU2-12P-201ENST00000517216 168 ntBASIC-0.22□□□□□ -2.45
CCDC88AQ3V6T2 LRRC34P1-201ENST00000542742 915 ntBASIC-0.22□□□□□ -2.45
CCDC88AQ3V6T2 AC027449.1-201ENST00000608890 407 ntBASIC-0.22□□□□□ -2.45
CCDC88AQ3V6T2 DLEU2_1.1-201ENST00000612089 120 ntBASIC-0.22□□□□□ -2.45
CCDC88AQ3V6T2 DISC2.1-201ENST00000612827 205 ntBASIC-0.22□□□□□ -2.45
CCDC88AQ3V6T2 DLEU2_1.2-201ENST00000614667 120 ntBASIC-0.22□□□□□ -2.45
CCDC88AQ3V6T2 VPS35-212ENST00000640313 141 ntTSL 5 BASIC-0.22□□□□□ -2.45
CCDC88AQ3V6T2 SNORA18.1-201ENST00000363418 128 ntBASIC-0.23□□□□□ -2.45
CCDC88AQ3V6T2 SNORD115-30-201ENST00000364117 82 ntBASIC-0.23□□□□□ -2.45
CCDC88AQ3V6T2 U8.5-201ENST00000364528 136 ntBASIC-0.23□□□□□ -2.45
CCDC88AQ3V6T2 RNU6-1175P-201ENST00000365200 107 ntBASIC-0.23□□□□□ -2.45
CCDC88AQ3V6T2 MIR145-201ENST00000384967 88 ntBASIC-0.23□□□□□ -2.45
CCDC88AQ3V6T2 RNU2-66P-201ENST00000410650 161 ntBASIC-0.23□□□□□ -2.45
CCDC88AQ3V6T2 RNU6-1068P-201ENST00000410958 103 ntBASIC-0.23□□□□□ -2.45
CCDC88AQ3V6T2 RNU6-847P-201ENST00000411115 108 ntBASIC-0.23□□□□□ -2.45
CCDC88AQ3V6T2 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC-0.23□□□□□ -2.45
CCDC88AQ3V6T2 AC091179.3-201ENST00000474761 144 ntBASIC-0.23□□□□□ -2.45
CCDC88AQ3V6T2 RNU6-911P-201ENST00000516523 104 ntBASIC-0.23□□□□□ -2.45
CCDC88AQ3V6T2 RNU6-1007P-201ENST00000516586 107 ntBASIC-0.23□□□□□ -2.45
CCDC88AQ3V6T2 RNU6-566P-201ENST00000516790 107 ntBASIC-0.23□□□□□ -2.45
CCDC88AQ3V6T2 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC-0.23□□□□□ -2.45
CCDC88AQ3V6T2 Y_RNA.423-201ENST00000384057 113 ntBASIC-0.24□□□□□ -2.45
CCDC88AQ3V6T2 RNU6-815P-201ENST00000384080 113 ntBASIC-0.24□□□□□ -2.45
CCDC88AQ3V6T2 RNU6-855P-201ENST00000410395 104 ntBASIC-0.24□□□□□ -2.45
CCDC88AQ3V6T2 AL353193.1-201ENST00000421444 268 ntBASIC-0.24□□□□□ -2.45
CCDC88AQ3V6T2 RPL30P15-201ENST00000457129 321 ntBASIC-0.24□□□□□ -2.45
CCDC88AQ3V6T2 RNU7-73P-201ENST00000458743 63 ntBASIC-0.24□□□□□ -2.45
CCDC88AQ3V6T2 RNU7-185P-201ENST00000459215 60 ntBASIC-0.24□□□□□ -2.45
CCDC88AQ3V6T2 snoU13.11-201ENST00000459219 104 ntBASIC-0.24□□□□□ -2.45
CCDC88AQ3V6T2 RNU6-625P-201ENST00000459412 107 ntBASIC-0.24□□□□□ -2.45
CCDC88AQ3V6T2 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC-0.24□□□□□ -2.45
CCDC88AQ3V6T2 RNU6-436P-201ENST00000516171 114 ntBASIC-0.24□□□□□ -2.45
CCDC88AQ3V6T2 Y_RNA.682-201ENST00000516457 100 ntBASIC-0.24□□□□□ -2.45
CCDC88AQ3V6T2 MIR4771-2-201ENST00000577758 74 ntBASIC-0.24□□□□□ -2.45
CCDC88AQ3V6T2 MIR4771-1-201ENST00000582617 74 ntBASIC-0.24□□□□□ -2.45
CCDC88AQ3V6T2 JPX_2.1-201ENST00000614161 69 ntBASIC-0.24□□□□□ -2.45
CCDC88AQ3V6T2 RNY3P3-201ENST00000363816 102 ntBASIC-0.24□□□□□ -2.45
CCDC88AQ3V6T2 RNU6-830P-201ENST00000516353 107 ntBASIC-0.24□□□□□ -2.45
CCDC88AQ3V6T2 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC-0.24□□□□□ -2.45
CCDC88AQ3V6T2 5S_rRNA.13-201ENST00000622298 123 ntBASIC-0.24□□□□□ -2.45
CCDC88AQ3V6T2 Y_RNA.135-201ENST00000363439 95 ntBASIC-0.25□□□□□ -2.45
CCDC88AQ3V6T2 MIR570-201ENST00000384917 97 ntBASIC-0.25□□□□□ -2.45
CCDC88AQ3V6T2 MIR518F-201ENST00000384973 87 ntBASIC-0.25□□□□□ -2.45
CCDC88AQ3V6T2 MT-TF-201ENST00000387314 71 ntBASIC-0.25□□□□□ -2.45
CCDC88AQ3V6T2 NDUFA4P2-201ENST00000489989 244 ntBASIC-0.25□□□□□ -2.45
CCDC88AQ3V6T2 RNU6-63P-201ENST00000516690 95 ntBASIC-0.25□□□□□ -2.45
CCDC88AQ3V6T2 RNU6-135P-201ENST00000516769 101 ntBASIC-0.25□□□□□ -2.45
CCDC88AQ3V6T2 MIR548AO-201ENST00000579992 96 ntBASIC-0.25□□□□□ -2.45
CCDC88AQ3V6T2 AC023510.2-201ENST00000622162 746 ntBASIC-0.25□□□□□ -2.45
CCDC88AQ3V6T2 SNORD114-28-201ENST00000363610 72 ntBASIC-0.26□□□□□ -2.45
CCDC88AQ3V6T2 RNU6-674P-201ENST00000363831 107 ntBASIC-0.26□□□□□ -2.45
CCDC88AQ3V6T2 SNORD116-11-201ENST00000383882 92 ntBASIC-0.26□□□□□ -2.45
CCDC88AQ3V6T2 RNY3P5-201ENST00000384127 102 ntBASIC-0.26□□□□□ -2.45
CCDC88AQ3V6T2 SNORA72-201ENST00000384339 132 ntBASIC-0.26□□□□□ -2.45
CCDC88AQ3V6T2 AL365203.2-201ENST00000423444 196 ntBASIC-0.26□□□□□ -2.45
CCDC88AQ3V6T2 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC-0.26□□□□□ -2.45
CCDC88AQ3V6T2 SEPT14P3-201ENST00000439401 183 ntBASIC-0.26□□□□□ -2.45
CCDC88AQ3V6T2 AL732372.2-207ENST00000445840 183 ntBASIC-0.26□□□□□ -2.45
CCDC88AQ3V6T2 SEPT14P2-201ENST00000453405 183 ntBASIC-0.26□□□□□ -2.45
CCDC88AQ3V6T2 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC-0.26□□□□□ -2.45
CCDC88AQ3V6T2 SEPT14P4-201ENST00000513445 186 ntBASIC-0.26□□□□□ -2.45
CCDC88AQ3V6T2 FO082796.1-201ENST00000523795 183 ntBASIC-0.26□□□□□ -2.45
CCDC88AQ3V6T2 AL355297.3-201ENST00000604082 446 ntBASIC-0.26□□□□□ -2.45
CCDC88AQ3V6T2 MIR6740-201ENST00000618268 113 ntBASIC-0.26□□□□□ -2.45
CCDC88AQ3V6T2 NEAT1_2.1-201ENST00000620525 105 ntBASIC-0.26□□□□□ -2.45
CCDC88AQ3V6T2 MIR3674-201ENST00000636576 68 ntBASIC-0.26□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 271.8 ms