Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SNORA72.3-201ENST00000365074 132 ntBASIC-0.37□□□□□ -2.47
FOXA3P55318 RNU6-442P-201ENST00000383968 104 ntBASIC-0.37□□□□□ -2.47
FOXA3P55318 RNU6-1126P-201ENST00000384002 107 ntBASIC-0.37□□□□□ -2.47
FOXA3P55318 MTCO2P19-201ENST00000427513 598 ntBASIC-0.37□□□□□ -2.47
FOXA3P55318 MTND1P27-201ENST00000451117 902 ntBASIC-0.37□□□□□ -2.47
FOXA3P55318 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC-0.37□□□□□ -2.47
FOXA3P55318 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC-0.37□□□□□ -2.47
FOXA3P55318 RNU6-848P-201ENST00000515948 107 ntBASIC-0.37□□□□□ -2.47
FOXA3P55318 RNU6-617P-201ENST00000516147 107 ntBASIC-0.37□□□□□ -2.47
FOXA3P55318 RNU6-473P-201ENST00000516164 107 ntBASIC-0.37□□□□□ -2.47
FOXA3P55318 RNU6-1049P-201ENST00000516414 107 ntBASIC-0.37□□□□□ -2.47
FOXA3P55318 MTCO2P4-201ENST00000517968 247 ntBASIC-0.37□□□□□ -2.47
FOXA3P55318 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC-0.37□□□□□ -2.47
FOXA3P55318 AL158211.1-201ENST00000566763 763 ntBASIC-0.37□□□□□ -2.47
FOXA3P55318 MIR4273-201ENST00000582824 84 ntBASIC-0.37□□□□□ -2.47
FOXA3P55318 AC040904.1-201ENST00000590850 223 ntBASIC-0.37□□□□□ -2.47
FOXA3P55318 AC079248.2-201ENST00000623779 326 ntBASIC-0.37□□□□□ -2.47
FOXA3P55318 MIR6828-201ENST00000636181 60 ntBASIC-0.37□□□□□ -2.47
FOXA3P55318 Y_RNA.48-201ENST00000362710 103 ntBASIC-0.38□□□□□ -2.47
FOXA3P55318 SNORD115-30-201ENST00000364117 82 ntBASIC-0.38□□□□□ -2.47
FOXA3P55318 SNORA1.1-201ENST00000364671 133 ntBASIC-0.38□□□□□ -2.47
FOXA3P55318 SNORA1.2-201ENST00000365189 134 ntBASIC-0.38□□□□□ -2.47
FOXA3P55318 Y_RNA.372-201ENST00000365599 102 ntBASIC-0.38□□□□□ -2.47
FOXA3P55318 RNU6-128P-201ENST00000383976 107 ntBASIC-0.38□□□□□ -2.47
FOXA3P55318 SNORD38B-201ENST00000384690 67 ntBASIC-0.38□□□□□ -2.47
FOXA3P55318 MIR106A-201ENST00000384870 81 ntBASIC-0.38□□□□□ -2.47
FOXA3P55318 CEP57L1P1-201ENST00000430943 1201 ntBASIC-0.38□□□□□ -2.47
FOXA3P55318 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC-0.38□□□□□ -2.47
FOXA3P55318 SNRPGP14-201ENST00000435400 219 ntBASIC-0.38□□□□□ -2.47
FOXA3P55318 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC-0.38□□□□□ -2.47
FOXA3P55318 RNU7-87P-201ENST00000459343 62 ntBASIC-0.38□□□□□ -2.47
FOXA3P55318 RNU6-261P-201ENST00000459506 102 ntBASIC-0.38□□□□□ -2.47
FOXA3P55318 RNU2-13P-201ENST00000515909 113 ntBASIC-0.38□□□□□ -2.47
FOXA3P55318 MTND1P24-201ENST00000552175 861 ntBASIC-0.38□□□□□ -2.47
FOXA3P55318 AC011921.3-201ENST00000605540 361 ntBASIC-0.38□□□□□ -2.47
FOXA3P55318 AC124303.1-201ENST00000605703 360 ntBASIC-0.38□□□□□ -2.47
FOXA3P55318 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC-0.38□□□□□ -2.47
FOXA3P55318 AL109933.3-201ENST00000619095 188 ntBASIC-0.38□□□□□ -2.47
FOXA3P55318 AC134878.1-201ENST00000619901 243 ntBASIC-0.38□□□□□ -2.47
FOXA3P55318 uc_338.22-201ENST00000622722 187 ntBASIC-0.38□□□□□ -2.47
FOXA3P55318 AC091304.10-201ENST00000641554 121 ntBASIC-0.38□□□□□ -2.47
FOXA3P55318 Y_RNA.115-201ENST00000363272 98 ntBASIC-0.39□□□□□ -2.47
FOXA3P55318 Y_RNA.169-201ENST00000363745 96 ntBASIC-0.39□□□□□ -2.47
FOXA3P55318 Y_RNA.205-201ENST00000364128 113 ntBASIC-0.39□□□□□ -2.47
FOXA3P55318 RNU6-1229P-201ENST00000364295 107 ntBASIC-0.39□□□□□ -2.47
FOXA3P55318 Y_RNA.373-201ENST00000365600 103 ntBASIC-0.39□□□□□ -2.47
FOXA3P55318 SNORA72-201ENST00000384339 132 ntBASIC-0.39□□□□□ -2.47
FOXA3P55318 RNU6-306P-201ENST00000384617 107 ntBASIC-0.39□□□□□ -2.47
FOXA3P55318 Y_RNA.540-201ENST00000384638 111 ntBASIC-0.39□□□□□ -2.47
FOXA3P55318 SNORA26.8-201ENST00000391306 124 ntBASIC-0.39□□□□□ -2.47
FOXA3P55318 RNA5SP127-201ENST00000411051 133 ntBASIC-0.39□□□□□ -2.47
FOXA3P55318 POLR2KP2-201ENST00000438155 177 ntBASIC-0.39□□□□□ -2.47
FOXA3P55318 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC-0.39□□□□□ -2.47
FOXA3P55318 RNU7-67P-201ENST00000459003 62 ntBASIC-0.39□□□□□ -2.47
FOXA3P55318 snoU13.16-201ENST00000459350 104 ntBASIC-0.39□□□□□ -2.47
FOXA3P55318 SNORA40.9-201ENST00000515895 93 ntBASIC-0.39□□□□□ -2.47
FOXA3P55318 RNU6-1012P-201ENST00000516606 109 ntBASIC-0.39□□□□□ -2.47
FOXA3P55318 SNORA31.14-201ENST00000516728 116 ntBASIC-0.39□□□□□ -2.47
FOXA3P55318 AC105029.1-201ENST00000520250 669 ntBASIC-0.39□□□□□ -2.47
FOXA3P55318 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC-0.39□□□□□ -2.47
FOXA3P55318 AL391262.2-201ENST00000622466 494 ntBASIC-0.39□□□□□ -2.47
FOXA3P55318 Y_RNA.32-201ENST00000362589 110 ntBASIC-0.4□□□□□ -2.47
FOXA3P55318 RNU6-595P-201ENST00000363944 107 ntBASIC-0.4□□□□□ -2.47
FOXA3P55318 RNU6-740P-201ENST00000364734 105 ntBASIC-0.4□□□□□ -2.47
FOXA3P55318 Y_RNA.361-201ENST00000365515 120 ntBASIC-0.4□□□□□ -2.47
FOXA3P55318 SNORA69-201ENST00000383895 132 ntBASIC-0.4□□□□□ -2.47
FOXA3P55318 Y_RNA.494-201ENST00000384432 111 ntBASIC-0.4□□□□□ -2.47
FOXA3P55318 AL031003.1-201ENST00000404229 172 ntBASIC-0.4□□□□□ -2.47
FOXA3P55318 SNORD93-201ENST00000408813 74 ntBASIC-0.4□□□□□ -2.47
FOXA3P55318 RNA5SP118-201ENST00000410385 109 ntBASIC-0.4□□□□□ -2.47
FOXA3P55318 MTND2P39-201ENST00000457230 764 ntBASIC-0.4□□□□□ -2.47
FOXA3P55318 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC-0.4□□□□□ -2.47
FOXA3P55318 RNA5SP47-201ENST00000517230 109 ntBASIC-0.4□□□□□ -2.47
FOXA3P55318 ZNF519P2-201ENST00000557032 169 ntBASIC-0.4□□□□□ -2.47
FOXA3P55318 MIR3152-201ENST00000579801 74 ntBASIC-0.4□□□□□ -2.47
FOXA3P55318 AL355297.3-201ENST00000604082 446 ntBASIC-0.4□□□□□ -2.47
FOXA3P55318 AC121247.2-201ENST00000604776 136 ntBASIC-0.4□□□□□ -2.47
FOXA3P55318 AC004467.1-201ENST00000615678 330 ntBASIC-0.4□□□□□ -2.47
FOXA3P55318 MIR8066-201ENST00000617280 78 ntBASIC-0.4□□□□□ -2.47
FOXA3P55318 AC097520.1-201ENST00000624435 385 ntBASIC-0.4□□□□□ -2.47
FOXA3P55318 ZNF299P-201ENST00000406845 1804 ntBASIC-0.41□□□□□ -2.47
FOXA3P55318 Y_RNA.1-201ENST00000352915 104 ntBASIC-0.41□□□□□ -2.48
FOXA3P55318 Y_RNA.42-201ENST00000362660 108 ntBASIC-0.41□□□□□ -2.48
FOXA3P55318 RNU6-1309P-201ENST00000363305 108 ntBASIC-0.41□□□□□ -2.48
FOXA3P55318 RNU6-522P-201ENST00000364497 107 ntBASIC-0.41□□□□□ -2.48
FOXA3P55318 RNU6-1103P-201ENST00000384150 107 ntBASIC-0.41□□□□□ -2.48
FOXA3P55318 RNU6-1310P-201ENST00000384153 107 ntBASIC-0.41□□□□□ -2.48
FOXA3P55318 Y_RNA.557-201ENST00000384680 107 ntBASIC-0.41□□□□□ -2.48
FOXA3P55318 RNU4-83P-201ENST00000410863 133 ntBASIC-0.41□□□□□ -2.48
FOXA3P55318 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC-0.41□□□□□ -2.48
FOXA3P55318 AC087499.4-201ENST00000448505 178 ntBASIC-0.41□□□□□ -2.48
FOXA3P55318 MTND1P17-201ENST00000448961 204 ntBASIC-0.41□□□□□ -2.48
FOXA3P55318 U8.19-201ENST00000459095 133 ntBASIC-0.41□□□□□ -2.48
FOXA3P55318 U8.22-201ENST00000459141 133 ntBASIC-0.41□□□□□ -2.48
FOXA3P55318 snoU13.2-201ENST00000459201 104 ntBASIC-0.41□□□□□ -2.48
FOXA3P55318 SNORD11.1-201ENST00000459482 85 ntBASIC-0.41□□□□□ -2.48
FOXA3P55318 RNU6-180P-201ENST00000516697 61 ntBASIC-0.41□□□□□ -2.48
FOXA3P55318 RNU6-958P-201ENST00000516995 106 ntBASIC-0.41□□□□□ -2.48
FOXA3P55318 RNU2-12P-201ENST00000517216 168 ntBASIC-0.41□□□□□ -2.48
FOXA3P55318 LRRC34P1-201ENST00000542742 915 ntBASIC-0.41□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms