Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC018630.2-201ENST00000534866 2403 ntBASIC2.4□□□□□ -2.02
MSX2P35548 SNORA63.4-201ENST00000362763 126 ntBASIC2.4□□□□□ -2.03
MSX2P35548 Y_RNA.617-201ENST00000410920 90 ntBASIC2.4□□□□□ -2.03
MSX2P35548 RNA5SP127-201ENST00000411051 133 ntBASIC2.4□□□□□ -2.03
MSX2P35548 Y_RNA.621-201ENST00000411065 96 ntBASIC2.4□□□□□ -2.03
MSX2P35548 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC2.4□□□□□ -2.03
MSX2P35548 SNRPGP10-201ENST00000432323 225 ntBASIC2.4□□□□□ -2.03
MSX2P35548 RPS15AP28-201ENST00000435088 386 ntBASIC2.4□□□□□ -2.03
MSX2P35548 AC107083.1-201ENST00000439643 279 ntBASIC2.4□□□□□ -2.03
MSX2P35548 RNU6-589P-201ENST00000516485 107 ntBASIC2.4□□□□□ -2.03
MSX2P35548 Y_RNA.709-201ENST00000516952 92 ntBASIC2.4□□□□□ -2.03
MSX2P35548 RNU6-341P-201ENST00000516973 96 ntBASIC2.4□□□□□ -2.03
MSX2P35548 MIR5092-201ENST00000583139 88 ntBASIC2.4□□□□□ -2.03
MSX2P35548 AC008507.4-201ENST00000585464 127 ntBASIC2.4□□□□□ -2.03
MSX2P35548 AC006023.1-201ENST00000603944 259 ntBASIC2.4□□□□□ -2.03
MSX2P35548 U6.95-201ENST00000636931 70 ntBASIC2.4□□□□□ -2.03
MSX2P35548 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.4□□□□□ -2.03
MSX2P35548 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
MSX2P35548 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.39□□□□□ -2.03
MSX2P35548 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
MSX2P35548 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
MSX2P35548 MIR21-201ENST00000362134 72 ntBASIC2.39□□□□□ -2.03
MSX2P35548 Y_RNA.99-201ENST00000363138 105 ntBASIC2.39□□□□□ -2.03
MSX2P35548 SNORA1-201ENST00000384107 130 ntBASIC2.39□□□□□ -2.03
MSX2P35548 SNORA12.1-201ENST00000390873 148 ntBASIC2.39□□□□□ -2.03
MSX2P35548 SNORD72-201ENST00000390994 80 ntBASIC2.39□□□□□ -2.03
MSX2P35548 RNA5SP21-201ENST00000410917 96 ntBASIC2.39□□□□□ -2.03
MSX2P35548 EDDM3CP-201ENST00000415977 425 ntBASIC2.39□□□□□ -2.03
MSX2P35548 AC233266.1-201ENST00000454518 96 ntBASIC2.39□□□□□ -2.03
MSX2P35548 RNU1-131P-201ENST00000458943 161 ntBASIC2.39□□□□□ -2.03
MSX2P35548 PDCD5P2-201ENST00000507570 312 ntBASIC2.39□□□□□ -2.03
MSX2P35548 SNORD33.1-201ENST00000516213 88 ntBASIC2.39□□□□□ -2.03
MSX2P35548 SNORA18.4-201ENST00000516440 124 ntBASIC2.39□□□□□ -2.03
MSX2P35548 RNU6-504P-201ENST00000516568 104 ntBASIC2.39□□□□□ -2.03
MSX2P35548 SNORD14A-201ENST00000606526 91 ntBASIC2.39□□□□□ -2.03
MSX2P35548 AC242852.1-201ENST00000612151 96 ntBASIC2.39□□□□□ -2.03
MSX2P35548 AC244015.1-201ENST00000622301 99 ntBASIC2.39□□□□□ -2.03
MSX2P35548 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
MSX2P35548 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
MSX2P35548 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.38□□□□□ -2.03
MSX2P35548 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
MSX2P35548 SNORD58C-201ENST00000365223 64 ntBASIC2.38□□□□□ -2.03
MSX2P35548 SNORD18B-201ENST00000365659 72 ntBASIC2.38□□□□□ -2.03
MSX2P35548 SNORD61-201ENST00000384252 73 ntBASIC2.38□□□□□ -2.03
MSX2P35548 RNU11-5P-201ENST00000391216 129 ntBASIC2.38□□□□□ -2.03
MSX2P35548 MIR1262-201ENST00000408276 93 ntBASIC2.38□□□□□ -2.03
MSX2P35548 AC087499.2-201ENST00000432861 149 ntBASIC2.38□□□□□ -2.03
MSX2P35548 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.38□□□□□ -2.03
MSX2P35548 Y_RNA.651-201ENST00000459380 103 ntBASIC2.38□□□□□ -2.03
MSX2P35548 RPS26P45-201ENST00000471748 340 ntBASIC2.38□□□□□ -2.03
MSX2P35548 AL358944.1-201ENST00000528537 144 ntBASIC2.38□□□□□ -2.03
MSX2P35548 AC133485.4-201ENST00000561835 220 ntBASIC2.38□□□□□ -2.03
MSX2P35548 MTND5P34-201ENST00000568888 325 ntBASIC2.38□□□□□ -2.03
MSX2P35548 AC138907.4-201ENST00000570107 226 ntBASIC2.38□□□□□ -2.03
MSX2P35548 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.38□□□□□ -2.03
MSX2P35548 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
MSX2P35548 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.38□□□□□ -2.03
MSX2P35548 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.37□□□□□ -2.03
MSX2P35548 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
MSX2P35548 RNU6-888P-201ENST00000363010 101 ntBASIC2.37□□□□□ -2.03
MSX2P35548 RNU6-301P-201ENST00000384277 107 ntBASIC2.37□□□□□ -2.03
MSX2P35548 MIRLET7F2-201ENST00000385277 83 ntBASIC2.37□□□□□ -2.03
MSX2P35548 RN7SL636P-201ENST00000497504 294 ntBASIC2.37□□□□□ -2.03
MSX2P35548 YWHAEP4-201ENST00000505390 198 ntBASIC2.37□□□□□ -2.03
MSX2P35548 RNA5SP236-201ENST00000516169 116 ntBASIC2.37□□□□□ -2.03
MSX2P35548 RNU6-1061P-201ENST00000516530 99 ntBASIC2.37□□□□□ -2.03
MSX2P35548 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.37□□□□□ -2.03
MSX2P35548 MIR3129-201ENST00000581095 76 ntBASIC2.37□□□□□ -2.03
MSX2P35548 AC108081.1-201ENST00000604358 221 ntBASIC2.37□□□□□ -2.03
MSX2P35548 AL591926.4-201ENST00000616895 298 ntBASIC2.37□□□□□ -2.03
MSX2P35548 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.37□□□□□ -2.03
MSX2P35548 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.37□□□□□ -2.03
MSX2P35548 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
MSX2P35548 MIR449A-201ENST00000362113 91 ntBASIC2.36□□□□□ -2.03
MSX2P35548 SNORA3A-201ENST00000364113 130 ntBASIC2.36□□□□□ -2.03
MSX2P35548 RNU6-647P-201ENST00000364243 107 ntBASIC2.36□□□□□ -2.03
MSX2P35548 RNU6-755P-201ENST00000364400 103 ntBASIC2.36□□□□□ -2.03
MSX2P35548 RNU6-1164P-201ENST00000364428 107 ntBASIC2.36□□□□□ -2.03
MSX2P35548 Y_RNA.267-201ENST00000364679 109 ntBASIC2.36□□□□□ -2.03
MSX2P35548 RNU1-91P-201ENST00000364746 163 ntBASIC2.36□□□□□ -2.03
MSX2P35548 RNU6-1292P-201ENST00000383856 107 ntBASIC2.36□□□□□ -2.03
MSX2P35548 SNORD24-201ENST00000383884 75 ntBASIC2.36□□□□□ -2.03
MSX2P35548 MIR548A2-201ENST00000384956 97 ntBASIC2.36□□□□□ -2.03
MSX2P35548 AL135938.1-201ENST00000443141 297 ntBASIC2.36□□□□□ -2.03
MSX2P35548 ATP5J2P3-201ENST00000451550 258 ntBASIC2.36□□□□□ -2.03
MSX2P35548 RN7SL429P-201ENST00000479090 223 ntBASIC2.36□□□□□ -2.03
MSX2P35548 RN7SL489P-201ENST00000486185 223 ntBASIC2.36□□□□□ -2.03
MSX2P35548 RN7SL327P-201ENST00000488659 223 ntBASIC2.36□□□□□ -2.03
MSX2P35548 RNU6-781P-201ENST00000516377 101 ntBASIC2.36□□□□□ -2.03
MSX2P35548 SNORA31.11-201ENST00000516528 139 ntBASIC2.36□□□□□ -2.03
MSX2P35548 RNU1-142P-201ENST00000516682 145 ntBASIC2.36□□□□□ -2.03
MSX2P35548 MIR3126-201ENST00000577443 74 ntBASIC2.36□□□□□ -2.03
MSX2P35548 AL022345.2-201ENST00000606307 135 ntBASIC2.36□□□□□ -2.03
MSX2P35548 AC245884.12-201ENST00000615364 59 ntBASIC2.36□□□□□ -2.03
MSX2P35548 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC2.36□□□□□ -2.03
MSX2P35548 RN7SL853P-201ENST00000617250 223 ntBASIC2.36□□□□□ -2.03
MSX2P35548 AC005336.3-201ENST00000623833 2679 ntBASIC2.36□□□□□ -2.03
MSX2P35548 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
MSX2P35548 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
MSX2P35548 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 121.7 ms