Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 RNU2-55P-201ENST00000411146 174 ntBASIC2.05□□□□□ -2.08
HOXD9P28356 AL121914.1-201ENST00000450188 156 ntBASIC2.05□□□□□ -2.08
HOXD9P28356 AL021397.1-201ENST00000451806 248 ntBASIC2.05□□□□□ -2.08
HOXD9P28356 SNRPGP8-201ENST00000454064 226 ntBASIC2.05□□□□□ -2.08
HOXD9P28356 SNORD116-25-201ENST00000516517 92 ntBASIC2.05□□□□□ -2.08
HOXD9P28356 SNORA31.11-201ENST00000516528 139 ntBASIC2.05□□□□□ -2.08
HOXD9P28356 MIR2681-201ENST00000581814 105 ntBASIC2.05□□□□□ -2.08
HOXD9P28356 AC091178.2-201ENST00000584401 117 ntBASIC2.05□□□□□ -2.08
HOXD9P28356 DNAJC19P2-201ENST00000593340 302 ntBASIC2.05□□□□□ -2.08
HOXD9P28356 AL929325.1-201ENST00000603096 117 ntBASIC2.05□□□□□ -2.08
HOXD9P28356 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.05□□□□□ -2.08
HOXD9P28356 AC100821.1-201ENST00000523153 2479 ntBASIC2.05□□□□□ -2.08
HOXD9P28356 RNU6-151P-201ENST00000364158 107 ntBASIC2.04□□□□□ -2.08
HOXD9P28356 SNORA16B-201ENST00000364674 135 ntBASIC2.04□□□□□ -2.08
HOXD9P28356 Y_RNA.343-201ENST00000365354 112 ntBASIC2.04□□□□□ -2.08
HOXD9P28356 SNORA6-201ENST00000384033 151 ntBASIC2.04□□□□□ -2.08
HOXD9P28356 Y_RNA.488-201ENST00000384403 102 ntBASIC2.04□□□□□ -2.08
HOXD9P28356 Y_RNA.568-201ENST00000384742 113 ntBASIC2.04□□□□□ -2.08
HOXD9P28356 MIR764-201ENST00000390811 85 ntBASIC2.04□□□□□ -2.08
HOXD9P28356 U8.13-201ENST00000390842 128 ntBASIC2.04□□□□□ -2.08
HOXD9P28356 RNU6-1041P-201ENST00000516254 102 ntBASIC2.04□□□□□ -2.08
HOXD9P28356 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC2.04□□□□□ -2.08
HOXD9P28356 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.04□□□□□ -2.08
HOXD9P28356 AC011604.1-201ENST00000545978 196 ntBASIC2.04□□□□□ -2.08
HOXD9P28356 AL160236.1-201ENST00000556317 195 ntBASIC2.04□□□□□ -2.08
HOXD9P28356 MIR5089-201ENST00000580047 84 ntBASIC2.04□□□□□ -2.08
HOXD9P28356 AL359075.3-201ENST00000613288 217 ntBASIC2.04□□□□□ -2.08
HOXD9P28356 U6.108-201ENST00000637764 58 ntBASIC2.04□□□□□ -2.08
HOXD9P28356 RNU6-818P-201ENST00000364837 108 ntBASIC2.03□□□□□ -2.08
HOXD9P28356 RNU6-131P-201ENST00000391144 107 ntBASIC2.03□□□□□ -2.08
HOXD9P28356 MIR548I2-201ENST00000408348 149 ntBASIC2.03□□□□□ -2.08
HOXD9P28356 ATP5J2P3-201ENST00000451550 258 ntBASIC2.03□□□□□ -2.08
HOXD9P28356 AC025033.1-201ENST00000463883 194 ntBASIC2.03□□□□□ -2.08
HOXD9P28356 RNA5SP82-201ENST00000516707 92 ntBASIC2.03□□□□□ -2.08
HOXD9P28356 AC073413.2-201ENST00000604332 360 ntBASIC2.03□□□□□ -2.08
HOXD9P28356 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.03□□□□□ -2.08
HOXD9P28356 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
HOXD9P28356 Y_RNA.796-201ENST00000364268 102 ntBASIC2.02□□□□□ -2.09
HOXD9P28356 RNU6-1164P-201ENST00000364428 107 ntBASIC2.02□□□□□ -2.09
HOXD9P28356 Y_RNA.799-201ENST00000364992 102 ntBASIC2.02□□□□□ -2.09
HOXD9P28356 Y_RNA.497-201ENST00000384447 98 ntBASIC2.02□□□□□ -2.09
HOXD9P28356 MIR515-2-201ENST00000384883 83 ntBASIC2.02□□□□□ -2.09
HOXD9P28356 MIR515-1-201ENST00000384884 83 ntBASIC2.02□□□□□ -2.09
HOXD9P28356 MIR144-201ENST00000384886 86 ntBASIC2.02□□□□□ -2.09
HOXD9P28356 RNA5SP467-201ENST00000391274 118 ntBASIC2.02□□□□□ -2.09
HOXD9P28356 RNU6-1186P-201ENST00000410429 97 ntBASIC2.02□□□□□ -2.09
HOXD9P28356 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.02□□□□□ -2.09
HOXD9P28356 AL606753.1-201ENST00000427435 87 ntBASIC2.02□□□□□ -2.09
HOXD9P28356 AL591806.2-201ENST00000433122 173 ntBASIC2.02□□□□□ -2.09
HOXD9P28356 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.02□□□□□ -2.09
HOXD9P28356 snoU13.23-201ENST00000458863 104 ntBASIC2.02□□□□□ -2.09
HOXD9P28356 RNU6-717P-201ENST00000459076 104 ntBASIC2.02□□□□□ -2.09
HOXD9P28356 SNORD11-201ENST00000459124 84 ntBASIC2.02□□□□□ -2.09
HOXD9P28356 AL358944.1-201ENST00000528537 144 ntBASIC2.02□□□□□ -2.09
HOXD9P28356 MIR3169-201ENST00000578032 83 ntBASIC2.02□□□□□ -2.09
HOXD9P28356 MIR3646-201ENST00000578301 84 ntBASIC2.02□□□□□ -2.09
HOXD9P28356 MIR548X2-201ENST00000579776 100 ntBASIC2.02□□□□□ -2.09
HOXD9P28356 SNRPGP19-201ENST00000603826 189 ntBASIC2.02□□□□□ -2.09
HOXD9P28356 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.02□□□□□ -2.09
HOXD9P28356 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
HOXD9P28356 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.01□□□□□ -2.09
HOXD9P28356 SNORD45.3-201ENST00000363836 72 ntBASIC2.01□□□□□ -2.09
HOXD9P28356 RNA5SP493-201ENST00000364115 91 ntBASIC2.01□□□□□ -2.09
HOXD9P28356 RNU6-484P-201ENST00000384016 107 ntBASIC2.01□□□□□ -2.09
HOXD9P28356 MIR569-201ENST00000385228 96 ntBASIC2.01□□□□□ -2.09
HOXD9P28356 Y_RNA.587-201ENST00000391210 103 ntBASIC2.01□□□□□ -2.09
HOXD9P28356 AC006461.1-201ENST00000412637 326 ntBASIC2.01□□□□□ -2.09
HOXD9P28356 CST2P1-201ENST00000425770 87 ntBASIC2.01□□□□□ -2.09
HOXD9P28356 RPS26P45-201ENST00000471748 340 ntBASIC2.01□□□□□ -2.09
HOXD9P28356 RNU1-142P-201ENST00000516682 145 ntBASIC2.01□□□□□ -2.09
HOXD9P28356 RNU6-341P-201ENST00000516973 96 ntBASIC2.01□□□□□ -2.09
HOXD9P28356 RNU6-1096P-201ENST00000517089 102 ntBASIC2.01□□□□□ -2.09
HOXD9P28356 AC024995.1-201ENST00000523014 93 ntBASIC2.01□□□□□ -2.09
HOXD9P28356 MIR5694-201ENST00000581190 76 ntBASIC2.01□□□□□ -2.09
HOXD9P28356 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.01□□□□□ -2.09
HOXD9P28356 AC018630.2-201ENST00000534866 2403 ntBASIC2.01□□□□□ -2.09
HOXD9P28356 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
HOXD9P28356 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2□□□□□ -2.09
HOXD9P28356 RNU6-1209P-201ENST00000363655 107 ntBASIC2□□□□□ -2.09
HOXD9P28356 MIR562-201ENST00000384894 95 ntBASIC2□□□□□ -2.09
HOXD9P28356 RNU11-3P-201ENST00000391111 133 ntBASIC2□□□□□ -2.09
HOXD9P28356 RNA5SP338-201ENST00000410495 85 ntBASIC2□□□□□ -2.09
HOXD9P28356 Y_RNA.622-201ENST00000411091 108 ntBASIC2□□□□□ -2.09
HOXD9P28356 SNORD77.4-201ENST00000516158 81 ntBASIC2□□□□□ -2.09
HOXD9P28356 RNA5SP153-201ENST00000516498 76 ntBASIC2□□□□□ -2.09
HOXD9P28356 RNU6-295P-201ENST00000516901 104 ntBASIC2□□□□□ -2.09
HOXD9P28356 RPL23AP91-201ENST00000569211 455 ntBASIC2□□□□□ -2.09
HOXD9P28356 MIR4524B-201ENST00000581569 115 ntBASIC2□□□□□ -2.09
HOXD9P28356 MIR6845-201ENST00000613182 61 ntBASIC2□□□□□ -2.09
HOXD9P28356 uc_338.4-201ENST00000616635 176 ntBASIC2□□□□□ -2.09
HOXD9P28356 MIR6079-201ENST00000635807 62 ntBASIC2□□□□□ -2.09
HOXD9P28356 MIR3658-201ENST00000636291 56 ntBASIC2□□□□□ -2.09
HOXD9P28356 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2□□□□□ -2.09
HOXD9P28356 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.99□□□□□ -2.09
HOXD9P28356 AL596028.1-201ENST00000326971 197 ntBASIC1.99□□□□□ -2.09
HOXD9P28356 RNA5SP37-201ENST00000365420 130 ntBASIC1.99□□□□□ -2.09
HOXD9P28356 AC019129.1-201ENST00000403786 261 ntBASIC1.99□□□□□ -2.09
HOXD9P28356 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.99□□□□□ -2.09
HOXD9P28356 BX510359.4-201ENST00000423750 193 ntBASIC1.99□□□□□ -2.09
HOXD9P28356 RPS27P1-201ENST00000450552 247 ntBASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 344.4 ms