Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 Y_RNA.24-201ENST00000362508 103 ntBASIC2.12□□□□□ -2.07
FOXN3O00409 RNU6-187P-201ENST00000384139 106 ntBASIC2.12□□□□□ -2.07
FOXN3O00409 RNU6-804P-201ENST00000384286 107 ntBASIC2.12□□□□□ -2.07
FOXN3O00409 RNU6-296P-201ENST00000384608 107 ntBASIC2.12□□□□□ -2.07
FOXN3O00409 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.12□□□□□ -2.07
FOXN3O00409 RNU6-1096P-201ENST00000517089 102 ntBASIC2.12□□□□□ -2.07
FOXN3O00409 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC2.12□□□□□ -2.07
FOXN3O00409 AC015720.1-201ENST00000565251 277 ntBASIC2.12□□□□□ -2.07
FOXN3O00409 AC022217.4-201ENST00000604389 163 ntBASIC2.12□□□□□ -2.07
FOXN3O00409 AC004832.4-201ENST00000608952 331 ntBASIC2.12□□□□□ -2.07
FOXN3O00409 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.12□□□□□ -2.07
FOXN3O00409 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
FOXN3O00409 Y_RNA.182-201ENST00000363880 111 ntBASIC2.11□□□□□ -2.07
FOXN3O00409 snoU2_19.4-201ENST00000364329 80 ntBASIC2.11□□□□□ -2.07
FOXN3O00409 RNU6-439P-201ENST00000384188 106 ntBASIC2.11□□□□□ -2.07
FOXN3O00409 Y_RNA.571-201ENST00000384753 98 ntBASIC2.11□□□□□ -2.07
FOXN3O00409 RNU6-383P-201ENST00000410864 94 ntBASIC2.11□□□□□ -2.07
FOXN3O00409 RNU5E-9P-201ENST00000411164 104 ntBASIC2.11□□□□□ -2.07
FOXN3O00409 MIR3133-201ENST00000583157 78 ntBASIC2.11□□□□□ -2.07
FOXN3O00409 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.11□□□□□ -2.07
FOXN3O00409 AL078604.3-201ENST00000615580 211 ntBASIC2.11□□□□□ -2.07
FOXN3O00409 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
FOXN3O00409 RNU6-1205P-201ENST00000363625 106 ntBASIC2.1□□□□□ -2.07
FOXN3O00409 U8.7-201ENST00000364940 136 ntBASIC2.1□□□□□ -2.07
FOXN3O00409 Y_RNA.412-201ENST00000384001 104 ntBASIC2.1□□□□□ -2.07
FOXN3O00409 RNA5SP489-201ENST00000410986 109 ntBASIC2.1□□□□□ -2.07
FOXN3O00409 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.1□□□□□ -2.07
FOXN3O00409 AC245047.8-201ENST00000456455 284 ntBASIC2.1□□□□□ -2.07
FOXN3O00409 RNU7-94P-201ENST00000459576 63 ntBASIC2.1□□□□□ -2.07
FOXN3O00409 RNU6-1007P-201ENST00000516586 107 ntBASIC2.1□□□□□ -2.07
FOXN3O00409 RNU2-56P-201ENST00000516826 190 ntBASIC2.1□□□□□ -2.07
FOXN3O00409 MTND5P41-201ENST00000517498 206 ntBASIC2.1□□□□□ -2.07
FOXN3O00409 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.1□□□□□ -2.07
FOXN3O00409 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.1□□□□□ -2.07
FOXN3O00409 U6.106-201ENST00000636360 105 ntBASIC2.1□□□□□ -2.07
FOXN3O00409 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.1□□□□□ -2.07
FOXN3O00409 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
FOXN3O00409 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
FOXN3O00409 Y_RNA.7-201ENST00000362352 102 ntBASIC2.09□□□□□ -2.07
FOXN3O00409 RNU6-899P-201ENST00000363947 107 ntBASIC2.09□□□□□ -2.07
FOXN3O00409 SNORA63D-201ENST00000364359 132 ntBASIC2.09□□□□□ -2.07
FOXN3O00409 Y_RNA.238-201ENST00000364441 102 ntBASIC2.09□□□□□ -2.07
FOXN3O00409 RNU6-969P-201ENST00000383900 105 ntBASIC2.09□□□□□ -2.07
FOXN3O00409 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.09□□□□□ -2.07
FOXN3O00409 AL162725.1-201ENST00000435405 301 ntBASIC2.09□□□□□ -2.07
FOXN3O00409 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.09□□□□□ -2.07
FOXN3O00409 RPS4XP11-201ENST00000446897 772 ntBASIC2.09□□□□□ -2.07
FOXN3O00409 snoU13.26-201ENST00000459452 105 ntBASIC2.09□□□□□ -2.07
FOXN3O00409 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.09□□□□□ -2.07
FOXN3O00409 RNU6-346P-201ENST00000516288 111 ntBASIC2.09□□□□□ -2.07
FOXN3O00409 RNU6-453P-201ENST00000516819 85 ntBASIC2.09□□□□□ -2.07
FOXN3O00409 MRPS18CP4-201ENST00000535821 231 ntBASIC2.09□□□□□ -2.07
FOXN3O00409 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.09□□□□□ -2.07
FOXN3O00409 AL929325.1-201ENST00000603096 117 ntBASIC2.09□□□□□ -2.07
FOXN3O00409 MIR548AY-201ENST00000617669 107 ntBASIC2.09□□□□□ -2.07
FOXN3O00409 Y_RNA.240-201ENST00000364469 95 ntBASIC2.08□□□□□ -2.08
FOXN3O00409 Y_RNA.265-201ENST00000364677 108 ntBASIC2.08□□□□□ -2.08
FOXN3O00409 RNU6-1080P-201ENST00000383982 107 ntBASIC2.08□□□□□ -2.08
FOXN3O00409 MT-TT-201ENST00000387460 66 ntBASIC2.08□□□□□ -2.08
FOXN3O00409 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
FOXN3O00409 RNU6-381P-201ENST00000391259 108 ntBASIC2.08□□□□□ -2.08
FOXN3O00409 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
FOXN3O00409 RPS27P1-201ENST00000450552 247 ntBASIC2.08□□□□□ -2.08
FOXN3O00409 RNA5SP481-201ENST00000516814 122 ntBASIC2.08□□□□□ -2.08
FOXN3O00409 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC2.08□□□□□ -2.08
FOXN3O00409 AC005972.2-201ENST00000604690 348 ntBASIC2.08□□□□□ -2.08
FOXN3O00409 MIR8054-201ENST00000620877 86 ntBASIC2.08□□□□□ -2.08
FOXN3O00409 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.08□□□□□ -2.08
FOXN3O00409 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
FOXN3O00409 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
FOXN3O00409 MIR367-201ENST00000362299 68 ntBASIC2.07□□□□□ -2.08
FOXN3O00409 Y_RNA.170-201ENST00000363746 110 ntBASIC2.07□□□□□ -2.08
FOXN3O00409 Y_RNA.398-201ENST00000383952 99 ntBASIC2.07□□□□□ -2.08
FOXN3O00409 RNU6-1323P-201ENST00000384025 107 ntBASIC2.07□□□□□ -2.08
FOXN3O00409 Y_RNA.506-201ENST00000384494 102 ntBASIC2.07□□□□□ -2.08
FOXN3O00409 SNORA8.3-201ENST00000384679 139 ntBASIC2.07□□□□□ -2.08
FOXN3O00409 MIR562-201ENST00000384894 95 ntBASIC2.07□□□□□ -2.08
FOXN3O00409 MIR520G-201ENST00000385064 90 ntBASIC2.07□□□□□ -2.08
FOXN3O00409 RNU6-440P-201ENST00000390882 105 ntBASIC2.07□□□□□ -2.08
FOXN3O00409 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.07□□□□□ -2.08
FOXN3O00409 SEPT7P4-201ENST00000437076 306 ntBASIC2.07□□□□□ -2.08
FOXN3O00409 STAG3L5P-204ENST00000443759 179 ntBASIC2.07□□□□□ -2.08
FOXN3O00409 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.07□□□□□ -2.08
FOXN3O00409 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.07□□□□□ -2.08
FOXN3O00409 snoU13.27-201ENST00000459278 104 ntBASIC2.07□□□□□ -2.08
FOXN3O00409 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.07□□□□□ -2.08
FOXN3O00409 RPL23AP54-201ENST00000495129 419 ntBASIC2.07□□□□□ -2.08
FOXN3O00409 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.07□□□□□ -2.08
FOXN3O00409 SCARNA8-201ENST00000515924 131 ntBASIC2.07□□□□□ -2.08
FOXN3O00409 Y_RNA.797-201ENST00000515977 94 ntBASIC2.07□□□□□ -2.08
FOXN3O00409 RNU7-115P-201ENST00000516433 55 ntBASIC2.07□□□□□ -2.08
FOXN3O00409 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.07□□□□□ -2.08
FOXN3O00409 MIR4709-201ENST00000577272 72 ntBASIC2.07□□□□□ -2.08
FOXN3O00409 AC091178.2-201ENST00000584401 117 ntBASIC2.07□□□□□ -2.08
FOXN3O00409 Y_RNA.802-201ENST00000614892 130 ntBASIC2.07□□□□□ -2.08
FOXN3O00409 MIR7843-201ENST00000622274 79 ntBASIC2.07□□□□□ -2.08
FOXN3O00409 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
FOXN3O00409 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
FOXN3O00409 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.06□□□□□ -2.08
FOXN3O00409 SNORA1B-201ENST00000362535 133 ntBASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 150 ms