Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC17.94■□□□□ 0.46
Smc1aQ9CU62 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Smc1aQ9CU62 Ighv6-1-201ENSMUST00000193612 343 ntBASIC17.94■□□□□ 0.46
Smc1aQ9CU62 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC17.94■□□□□ 0.46
Smc1aQ9CU62 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Smc1aQ9CU62 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
Smc1aQ9CU62 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Smc1aQ9CU62 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC17.94■□□□□ 0.46
Smc1aQ9CU62 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Smc1aQ9CU62 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Smc1aQ9CU62 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
Smc1aQ9CU62 AC154855.1-201ENSMUST00000227353 1458 ntBASIC17.94■□□□□ 0.46
Smc1aQ9CU62 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Smc1aQ9CU62 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Smc1aQ9CU62 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Smc1aQ9CU62 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Smc1aQ9CU62 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Smc1aQ9CU62 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Smc1aQ9CU62 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Smc1aQ9CU62 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Smc1aQ9CU62 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Smc1aQ9CU62 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Smc1aQ9CU62 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Smc1aQ9CU62 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Smc1aQ9CU62 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC17.93■□□□□ 0.46
Smc1aQ9CU62 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC17.93■□□□□ 0.46
Smc1aQ9CU62 Gm44771-201ENSMUST00000206975 626 ntBASIC17.93■□□□□ 0.46
Smc1aQ9CU62 Gm18115-201ENSMUST00000221209 621 ntBASIC17.93■□□□□ 0.46
Smc1aQ9CU62 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC17.93■□□□□ 0.46
Smc1aQ9CU62 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Smc1aQ9CU62 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Smc1aQ9CU62 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Smc1aQ9CU62 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Smc1aQ9CU62 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC17.93■□□□□ 0.46
Smc1aQ9CU62 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Smc1aQ9CU62 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Smc1aQ9CU62 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Smc1aQ9CU62 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Smc1aQ9CU62 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Smc1aQ9CU62 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Smc1aQ9CU62 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Smc1aQ9CU62 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC17.92■□□□□ 0.46
Smc1aQ9CU62 Gm43598-201ENSMUST00000202482 2479 ntBASIC17.92■□□□□ 0.46
Smc1aQ9CU62 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Smc1aQ9CU62 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC17.92■□□□□ 0.46
Smc1aQ9CU62 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Smc1aQ9CU62 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC17.92■□□□□ 0.46
Smc1aQ9CU62 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Smc1aQ9CU62 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Smc1aQ9CU62 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Smc1aQ9CU62 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Smc1aQ9CU62 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Smc1aQ9CU62 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Smc1aQ9CU62 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC17.92■□□□□ 0.46
Smc1aQ9CU62 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Smc1aQ9CU62 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Smc1aQ9CU62 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Smc1aQ9CU62 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Smc1aQ9CU62 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
Smc1aQ9CU62 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Smc1aQ9CU62 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Smc1aQ9CU62 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Smc1aQ9CU62 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC17.91■□□□□ 0.46
Smc1aQ9CU62 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Smc1aQ9CU62 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Smc1aQ9CU62 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Smc1aQ9CU62 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC17.91■□□□□ 0.46
Smc1aQ9CU62 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Smc1aQ9CU62 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Smc1aQ9CU62 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC17.91■□□□□ 0.46
Smc1aQ9CU62 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Smc1aQ9CU62 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Smc1aQ9CU62 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Smc1aQ9CU62 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Smc1aQ9CU62 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Smc1aQ9CU62 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Smc1aQ9CU62 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Smc1aQ9CU62 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Smc1aQ9CU62 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC17.9■□□□□ 0.46
Smc1aQ9CU62 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Smc1aQ9CU62 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Smc1aQ9CU62 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Smc1aQ9CU62 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Smc1aQ9CU62 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Smc1aQ9CU62 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Smc1aQ9CU62 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
Smc1aQ9CU62 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC17.9■□□□□ 0.46
Smc1aQ9CU62 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
Smc1aQ9CU62 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Smc1aQ9CU62 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC17.9■□□□□ 0.46
Smc1aQ9CU62 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Smc1aQ9CU62 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Smc1aQ9CU62 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Smc1aQ9CU62 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Smc1aQ9CU62 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
Smc1aQ9CU62 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
Smc1aQ9CU62 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Smc1aQ9CU62 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Smc1aQ9CU62 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC17.89■□□□□ 0.45
Smc1aQ9CU62 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms