Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim11Q99PQ2 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim11Q99PQ2 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
Trim11Q99PQ2 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim11Q99PQ2 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim11Q99PQ2 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Trim11Q99PQ2 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim11Q99PQ2 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trim11Q99PQ2 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Trim11Q99PQ2 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim11Q99PQ2 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim11Q99PQ2 Zkscan4-202ENSMUST00000225845 1506 ntBASIC18.3■□□□□ 0.52
Trim11Q99PQ2 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Trim11Q99PQ2 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Trim11Q99PQ2 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Trim11Q99PQ2 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trim11Q99PQ2 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Trim11Q99PQ2 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Trim11Q99PQ2 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trim11Q99PQ2 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trim11Q99PQ2 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim11Q99PQ2 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim11Q99PQ2 Gm6858-201ENSMUST00000208582 1468 ntBASIC18.3■□□□□ 0.52
Trim11Q99PQ2 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim11Q99PQ2 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim11Q99PQ2 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim11Q99PQ2 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim11Q99PQ2 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim11Q99PQ2 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trim11Q99PQ2 Gm9889-202ENSMUST00000206983 1577 ntBASIC18.3■□□□□ 0.52
Trim11Q99PQ2 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC18.29■□□□□ 0.52
Trim11Q99PQ2 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim11Q99PQ2 AC093043.3-201ENSMUST00000226531 2273 ntBASIC18.29■□□□□ 0.52
Trim11Q99PQ2 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim11Q99PQ2 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Trim11Q99PQ2 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim11Q99PQ2 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim11Q99PQ2 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim11Q99PQ2 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim11Q99PQ2 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
Trim11Q99PQ2 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim11Q99PQ2 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim11Q99PQ2 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim11Q99PQ2 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim11Q99PQ2 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim11Q99PQ2 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim11Q99PQ2 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim11Q99PQ2 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
Trim11Q99PQ2 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC18.29■□□□□ 0.52
Trim11Q99PQ2 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim11Q99PQ2 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim11Q99PQ2 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC18.29■□□□□ 0.52
Trim11Q99PQ2 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim11Q99PQ2 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim11Q99PQ2 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim11Q99PQ2 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim11Q99PQ2 AC132265.1-201ENSMUST00000219233 1665 ntBASIC18.28■□□□□ 0.52
Trim11Q99PQ2 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim11Q99PQ2 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC18.28■□□□□ 0.52
Trim11Q99PQ2 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim11Q99PQ2 Gm42473-201ENSMUST00000201056 2291 ntBASIC18.28■□□□□ 0.52
Trim11Q99PQ2 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim11Q99PQ2 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC18.28■□□□□ 0.52
Trim11Q99PQ2 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim11Q99PQ2 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Trim11Q99PQ2 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim11Q99PQ2 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC18.28■□□□□ 0.52
Trim11Q99PQ2 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim11Q99PQ2 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim11Q99PQ2 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim11Q99PQ2 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim11Q99PQ2 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim11Q99PQ2 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim11Q99PQ2 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim11Q99PQ2 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim11Q99PQ2 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim11Q99PQ2 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim11Q99PQ2 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC18.28■□□□□ 0.52
Trim11Q99PQ2 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim11Q99PQ2 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim11Q99PQ2 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.52
Trim11Q99PQ2 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim11Q99PQ2 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Trim11Q99PQ2 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim11Q99PQ2 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim11Q99PQ2 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim11Q99PQ2 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC18.27■□□□□ 0.52
Trim11Q99PQ2 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC18.27■□□□□ 0.52
Trim11Q99PQ2 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Trim11Q99PQ2 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC18.27■□□□□ 0.52
Trim11Q99PQ2 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Trim11Q99PQ2 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim11Q99PQ2 AC153526.5-201ENSMUST00000218661 2147 ntBASIC18.27■□□□□ 0.52
Trim11Q99PQ2 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC18.27■□□□□ 0.52
Trim11Q99PQ2 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim11Q99PQ2 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim11Q99PQ2 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim11Q99PQ2 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim11Q99PQ2 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
Trim11Q99PQ2 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms