Protein–RNA interactions for Protein: Q99J95

Cdk9, Cyclin-dependent kinase 9, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk9Q99J95 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cdk9Q99J95 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Cdk9Q99J95 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cdk9Q99J95 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cdk9Q99J95 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
Cdk9Q99J95 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cdk9Q99J95 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC16.19■□□□□ 0.18
Cdk9Q99J95 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Cdk9Q99J95 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdk9Q99J95 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdk9Q99J95 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Cdk9Q99J95 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Cdk9Q99J95 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdk9Q99J95 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdk9Q99J95 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdk9Q99J95 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdk9Q99J95 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Cdk9Q99J95 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdk9Q99J95 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdk9Q99J95 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdk9Q99J95 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdk9Q99J95 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdk9Q99J95 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdk9Q99J95 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdk9Q99J95 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Cdk9Q99J95 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdk9Q99J95 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdk9Q99J95 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Cdk9Q99J95 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC16.19■□□□□ 0.18
Cdk9Q99J95 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Cdk9Q99J95 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cdk9Q99J95 Gm42901-201ENSMUST00000197735 3171 ntBASIC16.18■□□□□ 0.18
Cdk9Q99J95 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cdk9Q99J95 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cdk9Q99J95 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cdk9Q99J95 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cdk9Q99J95 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cdk9Q99J95 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cdk9Q99J95 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Cdk9Q99J95 AC154649.1-201ENSMUST00000227392 384 ntBASIC16.18■□□□□ 0.18
Cdk9Q99J95 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cdk9Q99J95 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Cdk9Q99J95 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cdk9Q99J95 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cdk9Q99J95 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cdk9Q99J95 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cdk9Q99J95 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cdk9Q99J95 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Cdk9Q99J95 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Gm10252-201ENSMUST00000209541 832 ntBASIC16.17■□□□□ 0.18
Cdk9Q99J95 Arhgef33-211ENSMUST00000225658 473 ntBASIC16.17■□□□□ 0.18
Cdk9Q99J95 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Cdk9Q99J95 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cdk9Q99J95 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Cdk9Q99J95 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cdk9Q99J95 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cdk9Q99J95 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cdk9Q99J95 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Cdk9Q99J95 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cdk9Q99J95 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cdk9Q99J95 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC16.16■□□□□ 0.18
Cdk9Q99J95 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Cdk9Q99J95 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Cdk9Q99J95 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC16.16■□□□□ 0.18
Cdk9Q99J95 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cdk9Q99J95 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cdk9Q99J95 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cdk9Q99J95 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cdk9Q99J95 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Cdk9Q99J95 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Cdk9Q99J95 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Cdk9Q99J95 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Cdk9Q99J95 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Cdk9Q99J95 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Cdk9Q99J95 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Cdk9Q99J95 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms