Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Brf1Q8CFK2 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Brf1Q8CFK2 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Brf1Q8CFK2 Gm17807-201ENSMUST00000186869 298 ntBASIC19.38■□□□□ 0.69
Brf1Q8CFK2 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Brf1Q8CFK2 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Brf1Q8CFK2 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Brf1Q8CFK2 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Brf1Q8CFK2 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC19.38■□□□□ 0.69
Brf1Q8CFK2 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Brf1Q8CFK2 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Brf1Q8CFK2 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Brf1Q8CFK2 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC19.37■□□□□ 0.69
Brf1Q8CFK2 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Brf1Q8CFK2 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC19.37■□□□□ 0.69
Brf1Q8CFK2 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Brf1Q8CFK2 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Brf1Q8CFK2 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Brf1Q8CFK2 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Brf1Q8CFK2 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC19.37■□□□□ 0.69
Brf1Q8CFK2 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC19.37■□□□□ 0.69
Brf1Q8CFK2 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Brf1Q8CFK2 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Brf1Q8CFK2 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
Brf1Q8CFK2 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Brf1Q8CFK2 Rbfox2-206ENSMUST00000227314 1810 ntBASIC19.37■□□□□ 0.69
Brf1Q8CFK2 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Brf1Q8CFK2 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Brf1Q8CFK2 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Brf1Q8CFK2 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC19.36■□□□□ 0.69
Brf1Q8CFK2 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Brf1Q8CFK2 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Brf1Q8CFK2 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Brf1Q8CFK2 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC19.36■□□□□ 0.69
Brf1Q8CFK2 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Brf1Q8CFK2 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC19.36■□□□□ 0.69
Brf1Q8CFK2 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Brf1Q8CFK2 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Brf1Q8CFK2 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Brf1Q8CFK2 Mir6404-201ENSMUST00000183699 94 ntBASIC19.36■□□□□ 0.69
Brf1Q8CFK2 AC124569.2-201ENSMUST00000225998 818 ntBASIC19.36■□□□□ 0.69
Brf1Q8CFK2 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Brf1Q8CFK2 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Brf1Q8CFK2 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Brf1Q8CFK2 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Brf1Q8CFK2 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Brf1Q8CFK2 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Brf1Q8CFK2 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Brf1Q8CFK2 Gm19430-201ENSMUST00000193847 2137 ntBASIC19.36■□□□□ 0.69
Brf1Q8CFK2 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Brf1Q8CFK2 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Brf1Q8CFK2 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Brf1Q8CFK2 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Brf1Q8CFK2 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Brf1Q8CFK2 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Brf1Q8CFK2 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Brf1Q8CFK2 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Brf1Q8CFK2 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC19.35■□□□□ 0.69
Brf1Q8CFK2 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Brf1Q8CFK2 Rprl3-201ENSMUST00000157400 290 ntBASIC19.35■□□□□ 0.69
Brf1Q8CFK2 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Brf1Q8CFK2 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Brf1Q8CFK2 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Brf1Q8CFK2 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Brf1Q8CFK2 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Brf1Q8CFK2 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Brf1Q8CFK2 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Brf1Q8CFK2 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Brf1Q8CFK2 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Brf1Q8CFK2 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Brf1Q8CFK2 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Brf1Q8CFK2 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Brf1Q8CFK2 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Brf1Q8CFK2 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Brf1Q8CFK2 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Brf1Q8CFK2 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Brf1Q8CFK2 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Brf1Q8CFK2 Ntrk2-205ENSMUST00000224402 2284 ntBASIC19.34■□□□□ 0.69
Brf1Q8CFK2 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Brf1Q8CFK2 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC19.34■□□□□ 0.69
Brf1Q8CFK2 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Brf1Q8CFK2 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Brf1Q8CFK2 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Brf1Q8CFK2 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
Brf1Q8CFK2 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Brf1Q8CFK2 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Brf1Q8CFK2 AC069562.2-201ENSMUST00000224644 2146 ntBASIC19.34■□□□□ 0.69
Brf1Q8CFK2 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC19.34■□□□□ 0.69
Brf1Q8CFK2 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Brf1Q8CFK2 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Brf1Q8CFK2 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Brf1Q8CFK2 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Brf1Q8CFK2 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Brf1Q8CFK2 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
Brf1Q8CFK2 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Brf1Q8CFK2 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Brf1Q8CFK2 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Brf1Q8CFK2 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Brf1Q8CFK2 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Brf1Q8CFK2 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC19.33■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms