Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim47Q8C0E3 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trim47Q8C0E3 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim47Q8C0E3 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim47Q8C0E3 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim47Q8C0E3 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trim47Q8C0E3 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Trim47Q8C0E3 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
Trim47Q8C0E3 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trim47Q8C0E3 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trim47Q8C0E3 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Ddx41-204ENSMUST00000224765 2199 ntBASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Gm4459-201ENSMUST00000118750 468 ntBASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Gm6376-201ENSMUST00000209407 580 ntBASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Rbfox2-207ENSMUST00000227533 1041 ntBASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Trim47Q8C0E3 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim47Q8C0E3 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim47Q8C0E3 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Trim47Q8C0E3 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim47Q8C0E3 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim47Q8C0E3 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Trim47Q8C0E3 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim47Q8C0E3 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim47Q8C0E3 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim47Q8C0E3 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim47Q8C0E3 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Trim47Q8C0E3 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC17.72■□□□□ 0.43
Trim47Q8C0E3 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Trim47Q8C0E3 Gm9172-201ENSMUST00000212092 954 ntBASIC17.72■□□□□ 0.43
Trim47Q8C0E3 Mzt1-203ENSMUST00000227948 952 ntBASIC17.72■□□□□ 0.43
Trim47Q8C0E3 Rps4l-201ENSMUST00000071745 943 ntBASIC17.72■□□□□ 0.43
Trim47Q8C0E3 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim47Q8C0E3 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim47Q8C0E3 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim47Q8C0E3 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim47Q8C0E3 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim47Q8C0E3 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim47Q8C0E3 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim47Q8C0E3 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Trim47Q8C0E3 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim47Q8C0E3 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim47Q8C0E3 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim47Q8C0E3 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim47Q8C0E3 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim47Q8C0E3 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms