Protein–RNA interactions for Protein: Q80TF3

Pcdh19, Protocadherin-19, mousemouse

Predictions only

Length 1,145 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh19Q80TF3 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Gm44357-201ENSMUST00000195897 142 ntBASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Gm19658-201ENSMUST00000196231 138 ntBASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Gm44367-201ENSMUST00000196836 138 ntBASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Gm44350-201ENSMUST00000197197 138 ntBASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Gm44390-201ENSMUST00000197533 144 ntBASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Gm44313-201ENSMUST00000198018 138 ntBASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Gm44486-201ENSMUST00000198508 138 ntBASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Gm44314-201ENSMUST00000199263 138 ntBASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Gm44394-201ENSMUST00000199558 138 ntBASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Gm44484-201ENSMUST00000199873 138 ntBASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Gm44466-201ENSMUST00000200264 138 ntBASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Gm44359-201ENSMUST00000200671 138 ntBASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Gm9449-201ENSMUST00000207265 1011 ntBASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Pcdh19Q80TF3 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Pcdh19Q80TF3 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Pcdh19Q80TF3 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Pcdh19Q80TF3 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Pcdh19Q80TF3 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Pcdh19Q80TF3 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Pcdh19Q80TF3 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
Pcdh19Q80TF3 Gm7862-201ENSMUST00000121461 292 ntBASIC15.71■□□□□ 0.11
Pcdh19Q80TF3 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Pcdh19Q80TF3 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC15.71■□□□□ 0.11
Pcdh19Q80TF3 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC15.71■□□□□ 0.11
Pcdh19Q80TF3 Vti1a-206ENSMUST00000225529 1244 ntBASIC15.71■□□□□ 0.11
Pcdh19Q80TF3 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Pcdh19Q80TF3 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Pcdh19Q80TF3 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC15.71■□□□□ 0.11
Pcdh19Q80TF3 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Pcdh19Q80TF3 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Pcdh19Q80TF3 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
Pcdh19Q80TF3 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Pcdh19Q80TF3 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Pcdh19Q80TF3 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 Gm13216-201ENSMUST00000117145 591 ntBASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 Gm4459-201ENSMUST00000118750 468 ntBASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 Gm4535-201ENSMUST00000182274 558 ntBASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 Mir6404-201ENSMUST00000183699 94 ntBASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 Gm10355-201ENSMUST00000097146 517 ntBASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh19Q80TF3 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdh19Q80TF3 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdh19Q80TF3 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdh19Q80TF3 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdh19Q80TF3 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdh19Q80TF3 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Pcdh19Q80TF3 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdh19Q80TF3 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdh19Q80TF3 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC15.69■□□□□ 0.1
Pcdh19Q80TF3 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdh19Q80TF3 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdh19Q80TF3 Gm8349-201ENSMUST00000182720 1003 ntBASIC15.69■□□□□ 0.1
Pcdh19Q80TF3 Gm6443-201ENSMUST00000203599 874 ntBASIC15.69■□□□□ 0.1
Pcdh19Q80TF3 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
Pcdh19Q80TF3 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdh19Q80TF3 Gm8655-201ENSMUST00000221159 852 ntBASIC15.69■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms