Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
Rnf220Q6PDX6 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Rnf220Q6PDX6 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Rnf220Q6PDX6 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Rnf220Q6PDX6 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Rnf220Q6PDX6 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Rnf220Q6PDX6 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Rnf220Q6PDX6 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Rnf220Q6PDX6 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Rnf220Q6PDX6 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Rnf220Q6PDX6 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Rnf220Q6PDX6 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Rnf220Q6PDX6 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Rnf220Q6PDX6 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Rnf220Q6PDX6 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC15.27■□□□□ 0.04
Rnf220Q6PDX6 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Rnf220Q6PDX6 Gm6576-201ENSMUST00000169678 883 ntBASIC15.27■□□□□ 0.04
Rnf220Q6PDX6 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC15.27■□□□□ 0.04
Rnf220Q6PDX6 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Rnf220Q6PDX6 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Rnf220Q6PDX6 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Rnf220Q6PDX6 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Rnf220Q6PDX6 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Rnf220Q6PDX6 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Rnf220Q6PDX6 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Rnf220Q6PDX6 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Rnf220Q6PDX6 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC15.27■□□□□ 0.03
Rnf220Q6PDX6 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
Rnf220Q6PDX6 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Rnf220Q6PDX6 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Rnf220Q6PDX6 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Rnf220Q6PDX6 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Rnf220Q6PDX6 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Rnf220Q6PDX6 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Rnf220Q6PDX6 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC15.27■□□□□ 0.03
Rnf220Q6PDX6 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Rnf220Q6PDX6 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Gm10602-201ENSMUST00000098239 609 ntBASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Rnf220Q6PDX6 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rnf220Q6PDX6 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rnf220Q6PDX6 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rnf220Q6PDX6 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rnf220Q6PDX6 Gm42473-201ENSMUST00000201056 2291 ntBASIC15.24■□□□□ 0.03
Rnf220Q6PDX6 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC15.24■□□□□ 0.03
Rnf220Q6PDX6 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rnf220Q6PDX6 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms