Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Six4Q61321 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Six4Q61321 Gm15372-201ENSMUST00000120729 834 ntBASIC16.19■□□□□ 0.18
Six4Q61321 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
Six4Q61321 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC16.19■□□□□ 0.18
Six4Q61321 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC16.19■□□□□ 0.18
Six4Q61321 AC127349.1-201ENSMUST00000224590 266 ntBASIC16.19■□□□□ 0.18
Six4Q61321 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Six4Q61321 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Six4Q61321 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Six4Q61321 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Six4Q61321 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Six4Q61321 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Six4Q61321 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Six4Q61321 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC16.18■□□□□ 0.18
Six4Q61321 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Six4Q61321 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC16.18■□□□□ 0.18
Six4Q61321 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Six4Q61321 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC16.18■□□□□ 0.18
Six4Q61321 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Six4Q61321 Gm25406-201ENSMUST00000157599 105 ntBASIC16.18■□□□□ 0.18
Six4Q61321 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Six4Q61321 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Six4Q61321 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC16.18■□□□□ 0.18
Six4Q61321 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Six4Q61321 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC16.18■□□□□ 0.18
Six4Q61321 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Six4Q61321 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Six4Q61321 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Six4Q61321 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Six4Q61321 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Six4Q61321 AC069562.2-201ENSMUST00000224644 2146 ntBASIC16.18■□□□□ 0.18
Six4Q61321 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Six4Q61321 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC16.18■□□□□ 0.18
Six4Q61321 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Six4Q61321 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six4Q61321 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six4Q61321 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six4Q61321 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six4Q61321 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six4Q61321 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC16.17■□□□□ 0.18
Six4Q61321 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six4Q61321 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six4Q61321 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six4Q61321 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six4Q61321 Gm7935-201ENSMUST00000100555 1278 ntBASIC16.17■□□□□ 0.18
Six4Q61321 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
Six4Q61321 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC16.17■□□□□ 0.18
Six4Q61321 AC108846.1-201ENSMUST00000214531 513 ntBASIC16.17■□□□□ 0.18
Six4Q61321 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six4Q61321 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six4Q61321 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six4Q61321 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six4Q61321 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six4Q61321 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six4Q61321 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six4Q61321 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six4Q61321 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Six4Q61321 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
Six4Q61321 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Six4Q61321 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Six4Q61321 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Six4Q61321 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Six4Q61321 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Six4Q61321 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Six4Q61321 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Six4Q61321 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC16.16■□□□□ 0.18
Six4Q61321 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Six4Q61321 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC16.16■□□□□ 0.18
Six4Q61321 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC16.16■□□□□ 0.18
Six4Q61321 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC16.16■□□□□ 0.18
Six4Q61321 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Six4Q61321 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Six4Q61321 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Six4Q61321 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC16.16■□□□□ 0.18
Six4Q61321 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Six4Q61321 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC16.16■□□□□ 0.18
Six4Q61321 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Six4Q61321 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Six4Q61321 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
Six4Q61321 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Six4Q61321 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Six4Q61321 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Six4Q61321 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six4Q61321 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six4Q61321 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
Six4Q61321 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Six4Q61321 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six4Q61321 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six4Q61321 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six4Q61321 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six4Q61321 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
Six4Q61321 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six4Q61321 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six4Q61321 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Six4Q61321 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six4Q61321 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six4Q61321 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC16.15■□□□□ 0.18
Six4Q61321 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Six4Q61321 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 46.6 ms