Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Nr1h4Q60641 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Nr1h4Q60641 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Nr1h4Q60641 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Nr1h4Q60641 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Nr1h4Q60641 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Nr1h4Q60641 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Nr1h4Q60641 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Nr1h4Q60641 Gm36967-201ENSMUST00000193814 266 ntBASIC15.3■□□□□ 0.04
Nr1h4Q60641 Gm43353-201ENSMUST00000199224 1295 ntBASIC15.3■□□□□ 0.04
Nr1h4Q60641 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC15.3■□□□□ 0.04
Nr1h4Q60641 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Nr1h4Q60641 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC15.3■□□□□ 0.04
Nr1h4Q60641 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Nr1h4Q60641 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Nr1h4Q60641 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Nr1h4Q60641 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Nr1h4Q60641 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Nr1h4Q60641 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Nr1h4Q60641 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Nr1h4Q60641 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Nr1h4Q60641 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Nr1h4Q60641 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Nr1h4Q60641 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Gm10653-202ENSMUST00000139570 835 ntBASIC15.29■□□□□ 0.04
Nr1h4Q60641 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC15.29■□□□□ 0.04
Nr1h4Q60641 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nr1h4Q60641 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Gm38042-201ENSMUST00000191614 5208 ntBASIC15.28■□□□□ 0.04
Nr1h4Q60641 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Nr1h4Q60641 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
Nr1h4Q60641 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Nr1h4Q60641 Prob1-201ENSMUST00000097619 3021 ntBASIC15.27■□□□□ 0.04
Nr1h4Q60641 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Nr1h4Q60641 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Nr1h4Q60641 Gm32996-201ENSMUST00000199828 1447 ntBASIC15.27■□□□□ 0.04
Nr1h4Q60641 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Nr1h4Q60641 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Nr1h4Q60641 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Nr1h4Q60641 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Nr1h4Q60641 Slc35b2-202ENSMUST00000223987 1766 ntBASIC15.27■□□□□ 0.04
Nr1h4Q60641 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Nr1h4Q60641 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Nr1h4Q60641 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Nr1h4Q60641 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Nr1h4Q60641 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC15.27■□□□□ 0.04
Nr1h4Q60641 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC15.27■□□□□ 0.04
Nr1h4Q60641 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC15.27■□□□□ 0.04
Nr1h4Q60641 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms