Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC17.18■□□□□ 0.34
Upf3bQ3ULL6 Ank2-226ENSMUST00000189368 339 ntBASIC17.18■□□□□ 0.34
Upf3bQ3ULL6 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC17.18■□□□□ 0.34
Upf3bQ3ULL6 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf3bQ3ULL6 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf3bQ3ULL6 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf3bQ3ULL6 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
Upf3bQ3ULL6 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf3bQ3ULL6 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf3bQ3ULL6 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf3bQ3ULL6 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf3bQ3ULL6 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf3bQ3ULL6 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf3bQ3ULL6 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf3bQ3ULL6 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf3bQ3ULL6 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Upf3bQ3ULL6 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Upf3bQ3ULL6 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC17.17■□□□□ 0.34
Upf3bQ3ULL6 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf3bQ3ULL6 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Upf3bQ3ULL6 Rprl3-201ENSMUST00000157400 290 ntBASIC17.17■□□□□ 0.34
Upf3bQ3ULL6 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf3bQ3ULL6 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf3bQ3ULL6 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Upf3bQ3ULL6 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Upf3bQ3ULL6 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3bQ3ULL6 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Upf3bQ3ULL6 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3bQ3ULL6 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3bQ3ULL6 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
Upf3bQ3ULL6 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC17.16■□□□□ 0.34
Upf3bQ3ULL6 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC17.16■□□□□ 0.34
Upf3bQ3ULL6 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC17.16■□□□□ 0.34
Upf3bQ3ULL6 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3bQ3ULL6 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC17.16■□□□□ 0.34
Upf3bQ3ULL6 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3bQ3ULL6 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Upf3bQ3ULL6 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3bQ3ULL6 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3bQ3ULL6 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC17.16■□□□□ 0.34
Upf3bQ3ULL6 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3bQ3ULL6 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3bQ3ULL6 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3bQ3ULL6 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3bQ3ULL6 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3bQ3ULL6 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3bQ3ULL6 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3bQ3ULL6 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Upf3bQ3ULL6 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3bQ3ULL6 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Upf3bQ3ULL6 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Upf3bQ3ULL6 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3bQ3ULL6 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
Upf3bQ3ULL6 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3bQ3ULL6 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3bQ3ULL6 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Upf3bQ3ULL6 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC17.15■□□□□ 0.34
Upf3bQ3ULL6 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3bQ3ULL6 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Upf3bQ3ULL6 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3bQ3ULL6 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3bQ3ULL6 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Upf3bQ3ULL6 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3bQ3ULL6 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3bQ3ULL6 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3bQ3ULL6 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3bQ3ULL6 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3bQ3ULL6 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC17.15■□□□□ 0.34
Upf3bQ3ULL6 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3bQ3ULL6 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3bQ3ULL6 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
Upf3bQ3ULL6 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3bQ3ULL6 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3bQ3ULL6 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Upf3bQ3ULL6 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Upf3bQ3ULL6 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3bQ3ULL6 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3bQ3ULL6 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3bQ3ULL6 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC17.14■□□□□ 0.33
Upf3bQ3ULL6 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Upf3bQ3ULL6 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3bQ3ULL6 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3bQ3ULL6 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC17.14■□□□□ 0.33
Upf3bQ3ULL6 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC17.14■□□□□ 0.33
Upf3bQ3ULL6 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3bQ3ULL6 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC17.14■□□□□ 0.33
Upf3bQ3ULL6 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC17.14■□□□□ 0.33
Upf3bQ3ULL6 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3bQ3ULL6 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC17.14■□□□□ 0.33
Upf3bQ3ULL6 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC17.14■□□□□ 0.33
Upf3bQ3ULL6 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3bQ3ULL6 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3bQ3ULL6 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3bQ3ULL6 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3bQ3ULL6 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3bQ3ULL6 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf3bQ3ULL6 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms