Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Ddb1Q3U1J4 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Ddb1Q3U1J4 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Ddb1Q3U1J4 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Ddb1Q3U1J4 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Ddb1Q3U1J4 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Ddb1Q3U1J4 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ddb1Q3U1J4 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ddb1Q3U1J4 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Ddb1Q3U1J4 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ddb1Q3U1J4 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC20.32■□□□□ 0.84
Ddb1Q3U1J4 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Ddb1Q3U1J4 Gm20553-201ENSMUST00000204205 844 ntBASIC20.32■□□□□ 0.84
Ddb1Q3U1J4 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ddb1Q3U1J4 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ddb1Q3U1J4 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Ddb1Q3U1J4 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ddb1Q3U1J4 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ddb1Q3U1J4 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Ddb1Q3U1J4 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ddb1Q3U1J4 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ddb1Q3U1J4 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Ddb1Q3U1J4 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ddb1Q3U1J4 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ddb1Q3U1J4 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Ddb1Q3U1J4 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
Ddb1Q3U1J4 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC20.31■□□□□ 0.84
Ddb1Q3U1J4 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ddb1Q3U1J4 Mir449b-201ENSMUST00000104833 80 ntBASIC20.31■□□□□ 0.84
Ddb1Q3U1J4 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC20.31■□□□□ 0.84
Ddb1Q3U1J4 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC20.31■□□□□ 0.84
Ddb1Q3U1J4 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC20.31■□□□□ 0.84
Ddb1Q3U1J4 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC20.31■□□□□ 0.84
Ddb1Q3U1J4 Gm19164-201ENSMUST00000210667 640 ntBASIC20.31■□□□□ 0.84
Ddb1Q3U1J4 Thap2-203ENSMUST00000218989 527 ntBASIC20.31■□□□□ 0.84
Ddb1Q3U1J4 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC20.31■□□□□ 0.84
Ddb1Q3U1J4 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ddb1Q3U1J4 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ddb1Q3U1J4 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Ddb1Q3U1J4 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ddb1Q3U1J4 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Ddb1Q3U1J4 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Ddb1Q3U1J4 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ddb1Q3U1J4 AC122335.2-201ENSMUST00000213901 6181 ntBASIC20.3■□□□□ 0.84
Ddb1Q3U1J4 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Ddb1Q3U1J4 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Ddb1Q3U1J4 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ddb1Q3U1J4 AC122024.2-201ENSMUST00000220086 871 ntBASIC20.3■□□□□ 0.84
Ddb1Q3U1J4 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ddb1Q3U1J4 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC20.3■□□□□ 0.84
Ddb1Q3U1J4 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ddb1Q3U1J4 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC20.3■□□□□ 0.84
Ddb1Q3U1J4 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Ddb1Q3U1J4 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
Ddb1Q3U1J4 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ddb1Q3U1J4 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ddb1Q3U1J4 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC20.29■□□□□ 0.84
Ddb1Q3U1J4 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ddb1Q3U1J4 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ddb1Q3U1J4 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ddb1Q3U1J4 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC20.29■□□□□ 0.84
Ddb1Q3U1J4 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Ddb1Q3U1J4 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ddb1Q3U1J4 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ddb1Q3U1J4 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Ddb1Q3U1J4 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Ddb1Q3U1J4 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Ddb1Q3U1J4 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ddb1Q3U1J4 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC20.29■□□□□ 0.84
Ddb1Q3U1J4 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ddb1Q3U1J4 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ddb1Q3U1J4 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ddb1Q3U1J4 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ddb1Q3U1J4 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ddb1Q3U1J4 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC20.28■□□□□ 0.84
Ddb1Q3U1J4 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Ddb1Q3U1J4 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ddb1Q3U1J4 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC20.28■□□□□ 0.84
Ddb1Q3U1J4 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC20.28■□□□□ 0.84
Ddb1Q3U1J4 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC20.28■□□□□ 0.84
Ddb1Q3U1J4 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC20.28■□□□□ 0.84
Ddb1Q3U1J4 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ddb1Q3U1J4 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ddb1Q3U1J4 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ddb1Q3U1J4 Gpr146-202ENSMUST00000053120 1040 ntBASIC20.28■□□□□ 0.84
Ddb1Q3U1J4 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ddb1Q3U1J4 Gm10461-201ENSMUST00000202073 4786 ntBASIC20.28■□□□□ 0.84
Ddb1Q3U1J4 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Ddb1Q3U1J4 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
Ddb1Q3U1J4 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ddb1Q3U1J4 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ddb1Q3U1J4 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ddb1Q3U1J4 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ddb1Q3U1J4 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ddb1Q3U1J4 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ddb1Q3U1J4 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC20.27■□□□□ 0.84
Ddb1Q3U1J4 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ddb1Q3U1J4 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Ddb1Q3U1J4 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Ddb1Q3U1J4 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC20.27■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms