Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Gm10461-201ENSMUST00000202073 4786 ntBASIC16.51■□□□□ 0.23
Sox9Q04887 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sox9Q04887 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sox9Q04887 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sox9Q04887 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sox9Q04887 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC16.51■□□□□ 0.23
Sox9Q04887 Gm15427-201ENSMUST00000117288 531 ntBASIC16.51■□□□□ 0.23
Sox9Q04887 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC16.51■□□□□ 0.23
Sox9Q04887 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
Sox9Q04887 Gm22175-201ENSMUST00000175007 78 ntBASIC16.51■□□□□ 0.23
Sox9Q04887 Gm7787-201ENSMUST00000216858 688 ntBASIC16.51■□□□□ 0.23
Sox9Q04887 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC16.51■□□□□ 0.23
Sox9Q04887 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC16.51■□□□□ 0.23
Sox9Q04887 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sox9Q04887 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sox9Q04887 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sox9Q04887 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sox9Q04887 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC16.51■□□□□ 0.23
Sox9Q04887 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC16.51■□□□□ 0.23
Sox9Q04887 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
Sox9Q04887 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Sox9Q04887 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sox9Q04887 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Sox9Q04887 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Sox9Q04887 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sox9Q04887 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC16.5■□□□□ 0.23
Sox9Q04887 Gm37519-201ENSMUST00000191687 2210 ntBASIC16.5■□□□□ 0.23
Sox9Q04887 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Sox9Q04887 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sox9Q04887 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Sox9Q04887 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC16.5■□□□□ 0.23
Sox9Q04887 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
Sox9Q04887 Mir6990-201ENSMUST00000183724 91 ntBASIC16.5■□□□□ 0.23
Sox9Q04887 Gm43474-201ENSMUST00000196415 774 ntBASIC16.5■□□□□ 0.23
Sox9Q04887 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC16.5■□□□□ 0.23
Sox9Q04887 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC16.5■□□□□ 0.23
Sox9Q04887 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Sox9Q04887 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sox9Q04887 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Sox9Q04887 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sox9Q04887 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
Sox9Q04887 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Sox9Q04887 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sox9Q04887 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Sox9Q04887 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sox9Q04887 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sox9Q04887 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sox9Q04887 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Sox9Q04887 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Sox9Q04887 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC16.49■□□□□ 0.23
Sox9Q04887 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sox9Q04887 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
Sox9Q04887 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
Sox9Q04887 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sox9Q04887 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sox9Q04887 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Sox9Q04887 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC16.49■□□□□ 0.23
Sox9Q04887 Gm11745-201ENSMUST00000121669 448 ntBASIC16.49■□□□□ 0.23
Sox9Q04887 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Sox9Q04887 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC16.49■□□□□ 0.23
Sox9Q04887 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Sox9Q04887 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sox9Q04887 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sox9Q04887 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sox9Q04887 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sox9Q04887 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sox9Q04887 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sox9Q04887 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Sox9Q04887 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sox9Q04887 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sox9Q04887 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Sox9Q04887 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Sox9Q04887 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Sox9Q04887 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Sox9Q04887 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Sox9Q04887 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sox9Q04887 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC16.48■□□□□ 0.23
Sox9Q04887 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Sox9Q04887 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sox9Q04887 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sox9Q04887 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Sox9Q04887 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sox9Q04887 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Sox9Q04887 Gm4609-201ENSMUST00000106443 1002 ntBASIC16.48■□□□□ 0.23
Sox9Q04887 Gm5138-201ENSMUST00000113842 1002 ntBASIC16.48■□□□□ 0.23
Sox9Q04887 Gm15191-201ENSMUST00000117933 1000 ntBASIC16.48■□□□□ 0.23
Sox9Q04887 Gm12182-201ENSMUST00000118655 1008 ntBASIC16.48■□□□□ 0.23
Sox9Q04887 Gm13882-201ENSMUST00000120886 1002 ntBASIC16.48■□□□□ 0.23
Sox9Q04887 Gm13597-201ENSMUST00000121239 375 ntBASIC16.48■□□□□ 0.23
Sox9Q04887 Gm10284-201ENSMUST00000145057 1005 ntBASIC16.48■□□□□ 0.23
Sox9Q04887 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Sox9Q04887 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Sox9Q04887 Gm10481-201ENSMUST00000179228 1002 ntBASIC16.48■□□□□ 0.23
Sox9Q04887 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC16.48■□□□□ 0.23
Sox9Q04887 Gm2574-201ENSMUST00000181051 1002 ntBASIC16.48■□□□□ 0.23
Sox9Q04887 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Sox9Q04887 Gm3200-201ENSMUST00000181493 1002 ntBASIC16.48■□□□□ 0.23
Sox9Q04887 Gm4518-201ENSMUST00000182638 718 ntBASIC16.48■□□□□ 0.23
Sox9Q04887 Gm8330-201ENSMUST00000182754 1008 ntBASIC16.48■□□□□ 0.23
Sox9Q04887 Gm4575-201ENSMUST00000182991 1002 ntBASIC16.48■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms