Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col8a1Q00780 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
Col8a1Q00780 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col8a1Q00780 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col8a1Q00780 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC13.66□□□□□ -0.22
Col8a1Q00780 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col8a1Q00780 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col8a1Q00780 Gm7507-201ENSMUST00000183053 1008 ntBASIC13.66□□□□□ -0.22
Col8a1Q00780 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col8a1Q00780 Gm8969-201ENSMUST00000199694 526 ntBASIC13.66□□□□□ -0.22
Col8a1Q00780 Gm7229-201ENSMUST00000214719 1007 ntBASIC13.66□□□□□ -0.22
Col8a1Q00780 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col8a1Q00780 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Col8a1Q00780 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC13.66□□□□□ -0.22
Col8a1Q00780 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col8a1Q00780 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col8a1Q00780 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col8a1Q00780 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
Col8a1Q00780 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
Col8a1Q00780 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col8a1Q00780 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Col8a1Q00780 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col8a1Q00780 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col8a1Q00780 Ddx41-204ENSMUST00000224765 2199 ntBASIC13.65□□□□□ -0.22
Col8a1Q00780 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col8a1Q00780 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC13.65□□□□□ -0.22
Col8a1Q00780 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col8a1Q00780 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col8a1Q00780 Gm12497-201ENSMUST00000138778 237 ntBASIC13.65□□□□□ -0.22
Col8a1Q00780 Gm11025-201ENSMUST00000140773 466 ntBASIC13.65□□□□□ -0.22
Col8a1Q00780 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC13.65□□□□□ -0.22
Col8a1Q00780 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC13.65□□□□□ -0.22
Col8a1Q00780 Gm8655-201ENSMUST00000221159 852 ntBASIC13.65□□□□□ -0.22
Col8a1Q00780 AC114585.2-202ENSMUST00000228094 426 ntBASIC13.65□□□□□ -0.22
Col8a1Q00780 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col8a1Q00780 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col8a1Q00780 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col8a1Q00780 Gm9889-202ENSMUST00000206983 1577 ntBASIC13.65□□□□□ -0.22
Col8a1Q00780 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
Col8a1Q00780 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col8a1Q00780 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col8a1Q00780 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col8a1Q00780 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 Zkscan3-208ENSMUST00000224820 5398 ntBASIC13.64□□□□□ -0.23
Col8a1Q00780 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC13.64□□□□□ -0.23
Col8a1Q00780 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
Col8a1Q00780 Gm20949-201ENSMUST00000206478 952 ntBASIC13.64□□□□□ -0.23
Col8a1Q00780 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Col8a1Q00780 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 Gm45203-201ENSMUST00000206384 1831 ntBASIC13.64□□□□□ -0.23
Col8a1Q00780 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col8a1Q00780 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col8a1Q00780 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col8a1Q00780 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col8a1Q00780 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col8a1Q00780 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC13.63□□□□□ -0.23
Col8a1Q00780 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col8a1Q00780 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col8a1Q00780 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col8a1Q00780 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col8a1Q00780 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC13.63□□□□□ -0.23
Col8a1Q00780 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col8a1Q00780 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col8a1Q00780 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC13.63□□□□□ -0.23
Col8a1Q00780 AA543401-201ENSMUST00000164248 1269 ntBASIC13.63□□□□□ -0.23
Col8a1Q00780 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col8a1Q00780 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col8a1Q00780 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC13.63□□□□□ -0.23
Col8a1Q00780 Gm44945-201ENSMUST00000206764 1187 ntBASIC13.63□□□□□ -0.23
Col8a1Q00780 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
Col8a1Q00780 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col8a1Q00780 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col8a1Q00780 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col8a1Q00780 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col8a1Q00780 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col8a1Q00780 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Col8a1Q00780 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms