Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Hmgb1P63158 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Hmgb1P63158 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Hmgb1P63158 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Hmgb1P63158 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Hmgb1P63158 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Hmgb1P63158 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Hmgb1P63158 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Hmgb1P63158 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb1P63158 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
Hmgb1P63158 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb1P63158 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Hmgb1P63158 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb1P63158 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb1P63158 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb1P63158 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC17.65■□□□□ 0.42
Hmgb1P63158 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb1P63158 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb1P63158 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb1P63158 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb1P63158 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb1P63158 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb1P63158 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb1P63158 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
Hmgb1P63158 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Hmgb1P63158 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb1P63158 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb1P63158 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb1P63158 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb1P63158 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Hmgb1P63158 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb1P63158 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb1P63158 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb1P63158 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb1P63158 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb1P63158 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb1P63158 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Hmgb1P63158 AC133083.1-201ENSMUST00000221736 2209 ntBASIC17.64■□□□□ 0.42
Hmgb1P63158 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb1P63158 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb1P63158 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb1P63158 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb1P63158 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb1P63158 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
Hmgb1P63158 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC17.64■□□□□ 0.41
Hmgb1P63158 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb1P63158 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC17.64■□□□□ 0.41
Hmgb1P63158 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC17.64■□□□□ 0.41
Hmgb1P63158 AC153881.2-201ENSMUST00000214877 204 ntBASIC17.64■□□□□ 0.41
Hmgb1P63158 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Hmgb1P63158 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC17.64■□□□□ 0.41
Hmgb1P63158 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
Hmgb1P63158 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb1P63158 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb1P63158 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC17.64■□□□□ 0.41
Hmgb1P63158 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Hmgb1P63158 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb1P63158 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb1P63158 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb1P63158 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb1P63158 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb1P63158 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb1P63158 Gm44729-201ENSMUST00000206759 2052 ntBASIC17.63■□□□□ 0.41
Hmgb1P63158 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb1P63158 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Hmgb1P63158 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb1P63158 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Hmgb1P63158 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb1P63158 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb1P63158 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
Hmgb1P63158 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb1P63158 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
Hmgb1P63158 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC17.63■□□□□ 0.41
Hmgb1P63158 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb1P63158 Gm44430-201ENSMUST00000203376 995 ntBASIC17.63■□□□□ 0.41
Hmgb1P63158 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Hmgb1P63158 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb1P63158 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb1P63158 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
Hmgb1P63158 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb1P63158 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb1P63158 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Hmgb1P63158 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Hmgb1P63158 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb1P63158 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb1P63158 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb1P63158 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb1P63158 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb1P63158 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb1P63158 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb1P63158 CT010478.1-201ENSMUST00000220747 2787 ntBASIC17.62■□□□□ 0.41
Hmgb1P63158 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb1P63158 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb1P63158 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb1P63158 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC17.62■□□□□ 0.41
Hmgb1P63158 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb1P63158 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb1P63158 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb1P63158 Gm10052-201ENSMUST00000168019 960 ntBASIC17.62■□□□□ 0.41
Hmgb1P63158 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms