Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Shmt1P50431 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Shmt1P50431 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Shmt1P50431 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Shmt1P50431 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Shmt1P50431 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC16.95■□□□□ 0.3
Shmt1P50431 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Shmt1P50431 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Shmt1P50431 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Shmt1P50431 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Shmt1P50431 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Shmt1P50431 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
Shmt1P50431 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Shmt1P50431 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Shmt1P50431 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Shmt1P50431 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Shmt1P50431 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC16.94■□□□□ 0.3
Shmt1P50431 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Shmt1P50431 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Shmt1P50431 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Shmt1P50431 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC16.94■□□□□ 0.3
Shmt1P50431 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC16.94■□□□□ 0.3
Shmt1P50431 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Shmt1P50431 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Shmt1P50431 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Shmt1P50431 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Shmt1P50431 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Shmt1P50431 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Shmt1P50431 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Shmt1P50431 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Shmt1P50431 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Shmt1P50431 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Shmt1P50431 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Shmt1P50431 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC16.93■□□□□ 0.3
Shmt1P50431 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Shmt1P50431 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Shmt1P50431 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Shmt1P50431 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Shmt1P50431 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Shmt1P50431 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Shmt1P50431 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Shmt1P50431 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Shmt1P50431 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Shmt1P50431 Gm11452-201ENSMUST00000122376 690 ntBASIC16.93■□□□□ 0.3
Shmt1P50431 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC16.93■□□□□ 0.3
Shmt1P50431 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Shmt1P50431 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Shmt1P50431 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Shmt1P50431 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Shmt1P50431 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC16.93■□□□□ 0.3
Shmt1P50431 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Shmt1P50431 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Shmt1P50431 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Shmt1P50431 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Shmt1P50431 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Shmt1P50431 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Shmt1P50431 Ddx41-204ENSMUST00000224765 2199 ntBASIC16.92■□□□□ 0.3
Shmt1P50431 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Shmt1P50431 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
Shmt1P50431 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Shmt1P50431 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Shmt1P50431 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Shmt1P50431 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Shmt1P50431 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Shmt1P50431 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Shmt1P50431 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC16.92■□□□□ 0.3
Shmt1P50431 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC16.92■□□□□ 0.3
Shmt1P50431 Gm6296-201ENSMUST00000222599 943 ntBASIC16.92■□□□□ 0.3
Shmt1P50431 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Shmt1P50431 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Shmt1P50431 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC16.92■□□□□ 0.3
Shmt1P50431 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Shmt1P50431 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Shmt1P50431 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Shmt1P50431 Gm37166-201ENSMUST00000195473 2474 ntBASIC16.92■□□□□ 0.3
Shmt1P50431 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Shmt1P50431 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Shmt1P50431 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
Shmt1P50431 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Shmt1P50431 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Shmt1P50431 Gm43548-201ENSMUST00000197139 2353 ntBASIC16.92■□□□□ 0.3
Shmt1P50431 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Shmt1P50431 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Shmt1P50431 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Shmt1P50431 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Shmt1P50431 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC16.91■□□□□ 0.3
Shmt1P50431 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Shmt1P50431 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Shmt1P50431 Gm28265-201ENSMUST00000188201 2319 ntBASIC16.91■□□□□ 0.3
Shmt1P50431 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC16.91■□□□□ 0.3
Shmt1P50431 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Shmt1P50431 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Shmt1P50431 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC16.91■□□□□ 0.3
Shmt1P50431 Gm13830-205ENSMUST00000201195 1155 ntBASIC16.91■□□□□ 0.3
Shmt1P50431 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC16.91■□□□□ 0.3
Shmt1P50431 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
Shmt1P50431 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Shmt1P50431 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Shmt1P50431 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Shmt1P50431 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 48.7 ms