Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Col1a1P11087 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col1a1P11087 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Col1a1P11087 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Col1a1P11087 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col1a1P11087 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col1a1P11087 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col1a1P11087 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col1a1P11087 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Col1a1P11087 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col1a1P11087 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col1a1P11087 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC18.67■□□□□ 0.58
Col1a1P11087 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col1a1P11087 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col1a1P11087 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col1a1P11087 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Col1a1P11087 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC18.67■□□□□ 0.58
Col1a1P11087 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col1a1P11087 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Col1a1P11087 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Col1a1P11087 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC18.67■□□□□ 0.58
Col1a1P11087 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col1a1P11087 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col1a1P11087 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col1a1P11087 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC18.67■□□□□ 0.58
Col1a1P11087 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col1a1P11087 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
Col1a1P11087 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col1a1P11087 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC18.66■□□□□ 0.58
Col1a1P11087 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col1a1P11087 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col1a1P11087 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Col1a1P11087 Gm6226-201ENSMUST00000117765 1146 ntBASIC18.66■□□□□ 0.58
Col1a1P11087 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col1a1P11087 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC18.66■□□□□ 0.58
Col1a1P11087 Rprl2-201ENSMUST00000157150 290 ntBASIC18.66■□□□□ 0.58
Col1a1P11087 Gm25948-201ENSMUST00000175334 112 ntBASIC18.66■□□□□ 0.58
Col1a1P11087 Gm43474-201ENSMUST00000196415 774 ntBASIC18.66■□□□□ 0.58
Col1a1P11087 Gm43125-201ENSMUST00000201724 730 ntBASIC18.66■□□□□ 0.58
Col1a1P11087 Gm20949-201ENSMUST00000206478 952 ntBASIC18.66■□□□□ 0.58
Col1a1P11087 AC122024.2-201ENSMUST00000220086 871 ntBASIC18.66■□□□□ 0.58
Col1a1P11087 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col1a1P11087 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col1a1P11087 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col1a1P11087 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col1a1P11087 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col1a1P11087 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col1a1P11087 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC18.65■□□□□ 0.58
Col1a1P11087 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
Col1a1P11087 AC131187.1-201ENSMUST00000224567 809 ntBASIC18.65■□□□□ 0.58
Col1a1P11087 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col1a1P11087 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col1a1P11087 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col1a1P11087 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
Col1a1P11087 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Col1a1P11087 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col1a1P11087 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC18.65■□□□□ 0.58
Col1a1P11087 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Col1a1P11087 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC18.65■□□□□ 0.58
Col1a1P11087 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC18.65■□□□□ 0.58
Col1a1P11087 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC18.65■□□□□ 0.58
Col1a1P11087 Gm5628-201ENSMUST00000222318 1049 ntBASIC18.65■□□□□ 0.58
Col1a1P11087 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Col1a1P11087 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Col1a1P11087 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC18.64■□□□□ 0.57
Col1a1P11087 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Col1a1P11087 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col1a1P11087 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Col1a1P11087 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col1a1P11087 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Col1a1P11087 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Col1a1P11087 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC18.64■□□□□ 0.57
Col1a1P11087 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC18.64■□□□□ 0.57
Col1a1P11087 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col1a1P11087 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Col1a1P11087 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Col1a1P11087 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC18.64■□□□□ 0.57
Col1a1P11087 Gm18889-201ENSMUST00000174284 929 ntBASIC18.64■□□□□ 0.57
Col1a1P11087 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC18.64■□□□□ 0.57
Col1a1P11087 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC18.64■□□□□ 0.57
Col1a1P11087 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Col1a1P11087 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col1a1P11087 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col1a1P11087 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col1a1P11087 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col1a1P11087 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col1a1P11087 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col1a1P11087 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col1a1P11087 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col1a1P11087 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC18.63■□□□□ 0.57
Col1a1P11087 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col1a1P11087 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col1a1P11087 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col1a1P11087 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col1a1P11087 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col1a1P11087 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Col1a1P11087 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Col1a1P11087 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC18.62■□□□□ 0.57
Col1a1P11087 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Col1a1P11087 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms