Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col5a1O88207 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col5a1O88207 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Col5a1O88207 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col5a1O88207 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col5a1O88207 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col5a1O88207 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col5a1O88207 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col5a1O88207 Gm27300-201ENSMUST00000184085 97 ntBASIC14.38□□□□□ -0.11
Col5a1O88207 Gm27335-201ENSMUST00000184758 97 ntBASIC14.38□□□□□ -0.11
Col5a1O88207 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC14.38□□□□□ -0.11
Col5a1O88207 Gm43125-201ENSMUST00000201724 730 ntBASIC14.38□□□□□ -0.11
Col5a1O88207 AC158538.2-201ENSMUST00000225455 906 ntBASIC14.38□□□□□ -0.11
Col5a1O88207 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col5a1O88207 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col5a1O88207 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col5a1O88207 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col5a1O88207 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col5a1O88207 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC14.38□□□□□ -0.11
Col5a1O88207 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col5a1O88207 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Col5a1O88207 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col5a1O88207 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC14.37□□□□□ -0.11
Col5a1O88207 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC14.37□□□□□ -0.11
Col5a1O88207 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Col5a1O88207 Gm13597-201ENSMUST00000121239 375 ntBASIC14.37□□□□□ -0.11
Col5a1O88207 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col5a1O88207 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col5a1O88207 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC14.37□□□□□ -0.11
Col5a1O88207 Gm9682-201ENSMUST00000197505 556 ntBASIC14.37□□□□□ -0.11
Col5a1O88207 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC14.37□□□□□ -0.11
Col5a1O88207 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col5a1O88207 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col5a1O88207 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC14.37□□□□□ -0.11
Col5a1O88207 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC14.37□□□□□ -0.11
Col5a1O88207 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col5a1O88207 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col5a1O88207 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col5a1O88207 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC14.37□□□□□ -0.11
Col5a1O88207 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
Col5a1O88207 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col5a1O88207 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col5a1O88207 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col5a1O88207 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col5a1O88207 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Col5a1O88207 Gm26596-201ENSMUST00000180464 2655 ntBASIC14.37□□□□□ -0.11
Col5a1O88207 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col5a1O88207 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col5a1O88207 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
Col5a1O88207 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col5a1O88207 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col5a1O88207 Gm44492-201ENSMUST00000197012 141 ntBASIC14.36□□□□□ -0.11
Col5a1O88207 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC14.36□□□□□ -0.11
Col5a1O88207 AC131187.1-201ENSMUST00000224567 809 ntBASIC14.36□□□□□ -0.11
Col5a1O88207 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC14.36□□□□□ -0.11
Col5a1O88207 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col5a1O88207 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Col5a1O88207 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Col5a1O88207 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col5a1O88207 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col5a1O88207 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col5a1O88207 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC14.36□□□□□ -0.11
Col5a1O88207 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col5a1O88207 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
Col5a1O88207 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
Col5a1O88207 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col5a1O88207 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
Col5a1O88207 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Col5a1O88207 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC14.36□□□□□ -0.11
Col5a1O88207 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC14.36□□□□□ -0.11
Col5a1O88207 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col5a1O88207 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC14.36□□□□□ -0.11
Col5a1O88207 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Col5a1O88207 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col5a1O88207 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC14.36□□□□□ -0.11
Col5a1O88207 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col5a1O88207 Gm13332-201ENSMUST00000120451 1398 ntBASIC14.36□□□□□ -0.11
Col5a1O88207 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Col5a1O88207 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC14.36□□□□□ -0.11
Col5a1O88207 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col5a1O88207 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col5a1O88207 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col5a1O88207 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col5a1O88207 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col5a1O88207 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col5a1O88207 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col5a1O88207 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC14.35□□□□□ -0.11
Col5a1O88207 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col5a1O88207 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC14.35□□□□□ -0.11
Col5a1O88207 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col5a1O88207 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Col5a1O88207 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
Col5a1O88207 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Col5a1O88207 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Col5a1O88207 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col5a1O88207 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col5a1O88207 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col5a1O88207 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col5a1O88207 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col5a1O88207 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms