Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hmgb3O54879 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Hmgb3O54879 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC13.36□□□□□ -0.27
Hmgb3O54879 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb3O54879 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb3O54879 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb3O54879 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb3O54879 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb3O54879 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb3O54879 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC13.36□□□□□ -0.27
Hmgb3O54879 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC13.36□□□□□ -0.27
Hmgb3O54879 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb3O54879 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb3O54879 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb3O54879 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb3O54879 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Hmgb3O54879 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb3O54879 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb3O54879 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
Hmgb3O54879 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC13.36□□□□□ -0.27
Hmgb3O54879 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb3O54879 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb3O54879 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb3O54879 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb3O54879 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC13.35□□□□□ -0.27
Hmgb3O54879 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb3O54879 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb3O54879 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb3O54879 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb3O54879 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb3O54879 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb3O54879 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC13.35□□□□□ -0.27
Hmgb3O54879 AC115863.1-201ENSMUST00000214815 1813 ntBASIC13.35□□□□□ -0.27
Hmgb3O54879 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC13.35□□□□□ -0.27
Hmgb3O54879 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb3O54879 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb3O54879 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb3O54879 Gm13148-201ENSMUST00000118892 745 ntBASIC13.35□□□□□ -0.27
Hmgb3O54879 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC13.35□□□□□ -0.27
Hmgb3O54879 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb3O54879 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb3O54879 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Hmgb3O54879 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Hmgb3O54879 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb3O54879 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb3O54879 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb3O54879 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb3O54879 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb3O54879 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb3O54879 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb3O54879 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb3O54879 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb3O54879 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Hmgb3O54879 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb3O54879 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb3O54879 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb3O54879 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb3O54879 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Hmgb3O54879 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Hmgb3O54879 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb3O54879 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb3O54879 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb3O54879 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb3O54879 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Hmgb3O54879 Gm4968-201ENSMUST00000071458 858 ntBASIC13.34□□□□□ -0.27
Hmgb3O54879 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb3O54879 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC13.34□□□□□ -0.27
Hmgb3O54879 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb3O54879 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb3O54879 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb3O54879 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb3O54879 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb3O54879 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb3O54879 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC13.34□□□□□ -0.27
Hmgb3O54879 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb3O54879 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb3O54879 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb3O54879 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC13.34□□□□□ -0.27
Hmgb3O54879 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb3O54879 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Hmgb3O54879 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Hmgb3O54879 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Hmgb3O54879 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
Hmgb3O54879 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Hmgb3O54879 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Hmgb3O54879 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Hmgb3O54879 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC13.33□□□□□ -0.28
Hmgb3O54879 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Hmgb3O54879 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Hmgb3O54879 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC13.33□□□□□ -0.28
Hmgb3O54879 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC13.33□□□□□ -0.28
Hmgb3O54879 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC13.33□□□□□ -0.28
Hmgb3O54879 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Hmgb3O54879 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Hmgb3O54879 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Hmgb3O54879 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Hmgb3O54879 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Hmgb3O54879 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Hmgb3O54879 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Hmgb3O54879 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 46.4 ms