Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Pcdhgb8A0A140LI48 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Pcdhgb8A0A140LI48 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Pcdhgb8A0A140LI48 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC14.55□□□□□ -0.08
Pcdhgb8A0A140LI48 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Pcdhgb8A0A140LI48 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Pcdhgb8A0A140LI48 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Pcdhgb8A0A140LI48 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Pcdhgb8A0A140LI48 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC14.55□□□□□ -0.08
Pcdhgb8A0A140LI48 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Pcdhgb8A0A140LI48 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Pcdhgb8A0A140LI48 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Pcdhgb8A0A140LI48 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Pcdhgb8A0A140LI48 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC14.55□□□□□ -0.08
Pcdhgb8A0A140LI48 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Gm4217-201ENSMUST00000182243 1002 ntBASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Mir1668-201ENSMUST00000184114 107 ntBASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 AC154412.1-201ENSMUST00000226540 2786 ntBASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Pcdhgb8A0A140LI48 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Gm23634-201ENSMUST00000175071 91 ntBASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Wnt10b-206ENSMUST00000228546 2709 ntBASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Pcdhgb8A0A140LI48 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Pcdhgb8A0A140LI48 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Pcdhgb8A0A140LI48 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Pcdhgb8A0A140LI48 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Pcdhgb8A0A140LI48 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Pcdhgb8A0A140LI48 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Pcdhgb8A0A140LI48 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Pcdhgb8A0A140LI48 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Pcdhgb8A0A140LI48 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC14.52□□□□□ -0.08
Pcdhgb8A0A140LI48 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Pcdhgb8A0A140LI48 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Pcdhgb8A0A140LI48 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC14.52□□□□□ -0.08
Pcdhgb8A0A140LI48 Prob1-201ENSMUST00000097619 3021 ntBASIC14.52□□□□□ -0.08
Pcdhgb8A0A140LI48 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC14.52□□□□□ -0.09
Pcdhgb8A0A140LI48 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Pcdhgb8A0A140LI48 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC14.52□□□□□ -0.09
Pcdhgb8A0A140LI48 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Pcdhgb8A0A140LI48 AC130671.1-201ENSMUST00000227384 1237 ntBASIC14.52□□□□□ -0.09
Pcdhgb8A0A140LI48 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
Pcdhgb8A0A140LI48 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Pcdhgb8A0A140LI48 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms