Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.32□□□□□ -2.2
CCDC28BQ9BUN5 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.31□□□□□ -2.2
CCDC28BQ9BUN5 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.31□□□□□ -2.2
CCDC28BQ9BUN5 SNORA25.1-201ENST00000362326 128 ntBASIC1.31□□□□□ -2.2
CCDC28BQ9BUN5 RNU6-203P-201ENST00000384038 104 ntBASIC1.31□□□□□ -2.2
CCDC28BQ9BUN5 RNU6-514P-201ENST00000384208 107 ntBASIC1.31□□□□□ -2.2
CCDC28BQ9BUN5 SNORA72-201ENST00000384339 132 ntBASIC1.31□□□□□ -2.2
CCDC28BQ9BUN5 Y_RNA.518-201ENST00000384552 113 ntBASIC1.31□□□□□ -2.2
CCDC28BQ9BUN5 RNU6-136P-201ENST00000384663 107 ntBASIC1.31□□□□□ -2.2
CCDC28BQ9BUN5 RNA5SP482-201ENST00000391269 118 ntBASIC1.31□□□□□ -2.2
CCDC28BQ9BUN5 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.31□□□□□ -2.2
CCDC28BQ9BUN5 MIR1267-201ENST00000408723 78 ntBASIC1.31□□□□□ -2.2
CCDC28BQ9BUN5 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1.31□□□□□ -2.2
CCDC28BQ9BUN5 AL118496.2-201ENST00000448300 230 ntBASIC1.31□□□□□ -2.2
CCDC28BQ9BUN5 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.31□□□□□ -2.2
CCDC28BQ9BUN5 RNU7-34P-201ENST00000459394 64 ntBASIC1.31□□□□□ -2.2
CCDC28BQ9BUN5 SERF1AP1-201ENST00000514575 187 ntBASIC1.31□□□□□ -2.2
CCDC28BQ9BUN5 MTCO2P24-201ENST00000515611 426 ntBASIC1.31□□□□□ -2.2
CCDC28BQ9BUN5 RNU6-1338P-201ENST00000516328 91 ntBASIC1.31□□□□□ -2.2
CCDC28BQ9BUN5 RNU6-1291P-201ENST00000516591 104 ntBASIC1.31□□□□□ -2.2
CCDC28BQ9BUN5 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
CCDC28BQ9BUN5 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.31□□□□□ -2.2
CCDC28BQ9BUN5 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 UBE2WP1-201ENST00000362030 340 ntBASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 MIR335-201ENST00000362173 94 ntBASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 RNU6-1123P-201ENST00000362347 106 ntBASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 SNORA1B-201ENST00000362535 133 ntBASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 Y_RNA.47-201ENST00000362697 108 ntBASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 RNU6-1309P-201ENST00000363305 108 ntBASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 RNU6-238P-201ENST00000363313 106 ntBASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 Y_RNA.133-201ENST00000363428 110 ntBASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 Y_RNA.376-201ENST00000365638 108 ntBASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 SNORA72.4-201ENST00000384174 132 ntBASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 RNU6-439P-201ENST00000384188 106 ntBASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 MIR194-1-201ENST00000384892 85 ntBASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 MIR1302-6-201ENST00000408466 90 ntBASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 AL161935.2-201ENST00000414627 60 ntBASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 MTCYBP9-201ENST00000431021 303 ntBASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 AL135790.2-201ENST00000437701 267 ntBASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 AL049830.1-201ENST00000468034 425 ntBASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 AC011604.1-201ENST00000545978 196 ntBASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 SNORA77B-201ENST00000578179 125 ntBASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 MIR3945-201ENST00000581853 98 ntBASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 AL512605.2-201ENST00000592972 256 ntBASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 AP003357.1-201ENST00000604497 148 ntBASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 AC068647.2-201ENST00000637380 353 ntBASIC1.3□□□□□ -2.2
CCDC28BQ9BUN5 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
CCDC28BQ9BUN5 RNU6-801P-201ENST00000364087 105 ntBASIC1.29□□□□□ -2.2
CCDC28BQ9BUN5 Y_RNA.265-201ENST00000364677 108 ntBASIC1.29□□□□□ -2.2
CCDC28BQ9BUN5 Y_RNA.461-201ENST00000384263 103 ntBASIC1.29□□□□□ -2.2
CCDC28BQ9BUN5 Y_RNA.556-201ENST00000384677 113 ntBASIC1.29□□□□□ -2.2
CCDC28BQ9BUN5 SNORA26.9-201ENST00000391322 122 ntBASIC1.29□□□□□ -2.2
CCDC28BQ9BUN5 MIR1302-3-201ENST00000408128 138 ntBASIC1.29□□□□□ -2.2
CCDC28BQ9BUN5 AC104332.1-201ENST00000440471 797 ntBASIC1.29□□□□□ -2.2
CCDC28BQ9BUN5 PGBD4P5-201ENST00000445958 426 ntBASIC1.29□□□□□ -2.2
CCDC28BQ9BUN5 AC233266.1-201ENST00000454518 96 ntBASIC1.29□□□□□ -2.2
CCDC28BQ9BUN5 AC099513.1-201ENST00000490423 301 ntBASIC1.29□□□□□ -2.2
CCDC28BQ9BUN5 RNU7-115P-201ENST00000516433 55 ntBASIC1.29□□□□□ -2.2
CCDC28BQ9BUN5 SNORA27.4-201ENST00000516650 95 ntBASIC1.29□□□□□ -2.2
CCDC28BQ9BUN5 RNU6-570P-201ENST00000517051 105 ntBASIC1.29□□□□□ -2.2
CCDC28BQ9BUN5 AL161670.1-201ENST00000554348 137 ntBASIC1.29□□□□□ -2.2
CCDC28BQ9BUN5 AC127455.1-201ENST00000565496 145 ntBASIC1.29□□□□□ -2.2
CCDC28BQ9BUN5 POLR3GP1-201ENST00000594073 261 ntBASIC1.29□□□□□ -2.2
CCDC28BQ9BUN5 AC242852.1-201ENST00000612151 96 ntBASIC1.29□□□□□ -2.2
CCDC28BQ9BUN5 AC021506.2-201ENST00000612354 169 ntBASIC1.29□□□□□ -2.2
CCDC28BQ9BUN5 AP001282.2-201ENST00000616149 309 ntBASIC1.29□□□□□ -2.2
CCDC28BQ9BUN5 MIR548AY-201ENST00000617669 107 ntBASIC1.29□□□□□ -2.2
CCDC28BQ9BUN5 AL513423.1-201ENST00000621695 132 ntBASIC1.29□□□□□ -2.2
CCDC28BQ9BUN5 AC244015.1-201ENST00000622301 99 ntBASIC1.29□□□□□ -2.2
CCDC28BQ9BUN5 Y_RNA.16-201ENST00000362421 102 ntBASIC1.28□□□□□ -2.2
CCDC28BQ9BUN5 STAG3L5P-204ENST00000443759 179 ntBASIC1.28□□□□□ -2.2
CCDC28BQ9BUN5 AC091959.1-201ENST00000495857 238 ntBASIC1.28□□□□□ -2.2
CCDC28BQ9BUN5 OR9P1P-201ENST00000496431 281 ntBASIC1.28□□□□□ -2.2
CCDC28BQ9BUN5 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.28□□□□□ -2.2
CCDC28BQ9BUN5 RNU1-41P-201ENST00000516161 162 ntBASIC1.28□□□□□ -2.2
CCDC28BQ9BUN5 RNU1-48P-201ENST00000516400 162 ntBASIC1.28□□□□□ -2.2
CCDC28BQ9BUN5 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.28□□□□□ -2.2
CCDC28BQ9BUN5 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.28□□□□□ -2.2
CCDC28BQ9BUN5 MIR4422-201ENST00000581938 83 ntBASIC1.28□□□□□ -2.2
CCDC28BQ9BUN5 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.28□□□□□ -2.2
CCDC28BQ9BUN5 AC073349.3-201ENST00000617616 186 ntBASIC1.28□□□□□ -2.2
CCDC28BQ9BUN5 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.28□□□□□ -2.2
CCDC28BQ9BUN5 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.28□□□□□ -2.2
CCDC28BQ9BUN5 AL391987.6-201ENST00000305671 199 ntBASIC1.27□□□□□ -2.21
CCDC28BQ9BUN5 MIR26B-201ENST00000362251 77 ntBASIC1.27□□□□□ -2.21
CCDC28BQ9BUN5 RNU6-899P-201ENST00000363947 107 ntBASIC1.27□□□□□ -2.21
CCDC28BQ9BUN5 RNU6-472P-201ENST00000384299 107 ntBASIC1.27□□□□□ -2.21
CCDC28BQ9BUN5 Y_RNA.512-201ENST00000384518 102 ntBASIC1.27□□□□□ -2.21
CCDC28BQ9BUN5 SNORA12.1-201ENST00000390873 148 ntBASIC1.27□□□□□ -2.21
CCDC28BQ9BUN5 MIR1261-201ENST00000408659 82 ntBASIC1.27□□□□□ -2.21
CCDC28BQ9BUN5 AC004965.1-201ENST00000413033 213 ntBASIC1.27□□□□□ -2.21
CCDC28BQ9BUN5 snoU13.9-201ENST00000458927 103 ntBASIC1.27□□□□□ -2.21
CCDC28BQ9BUN5 DEFB108E-201ENST00000524692 240 ntBASIC1.27□□□□□ -2.21
CCDC28BQ9BUN5 AC024405.2-202ENST00000532731 184 ntBASIC1.27□□□□□ -2.21
CCDC28BQ9BUN5 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.26□□□□□ -2.21
CCDC28BQ9BUN5 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.26□□□□□ -2.21
CCDC28BQ9BUN5 Y_RNA.217-201ENST00000364214 105 ntBASIC1.26□□□□□ -2.21
CCDC28BQ9BUN5 U8.5-201ENST00000364528 136 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 174 ms