Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC004223.4-201ENST00000612426 332 ntBASIC-0.14□□□□□ -2.43
CCDC88AQ3V6T2 Y_RNA.381-201ENST00000365666 102 ntBASIC-0.14□□□□□ -2.43
CCDC88AQ3V6T2 MIR125B2-201ENST00000385128 89 ntBASIC-0.14□□□□□ -2.43
CCDC88AQ3V6T2 SNORA26.8-201ENST00000391306 124 ntBASIC-0.14□□□□□ -2.43
CCDC88AQ3V6T2 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC-0.14□□□□□ -2.43
CCDC88AQ3V6T2 MRPS10P2-201ENST00000431226 381 ntBASIC-0.14□□□□□ -2.43
CCDC88AQ3V6T2 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC-0.14□□□□□ -2.43
CCDC88AQ3V6T2 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC-0.14□□□□□ -2.43
CCDC88AQ3V6T2 RNU6-107P-201ENST00000516643 102 ntBASIC-0.14□□□□□ -2.43
CCDC88AQ3V6T2 SNORD92-201ENST00000585078 85 ntBASIC-0.14□□□□□ -2.43
CCDC88AQ3V6T2 POLR3GP1-201ENST00000594073 261 ntBASIC-0.14□□□□□ -2.43
CCDC88AQ3V6T2 ZNF299P-201ENST00000406845 1804 ntBASIC-0.15□□□□□ -2.43
CCDC88AQ3V6T2 SNORD14.1-201ENST00000365609 90 ntBASIC-0.15□□□□□ -2.43
CCDC88AQ3V6T2 RNU6-46P-201ENST00000383860 107 ntBASIC-0.15□□□□□ -2.43
CCDC88AQ3V6T2 SNORA24-201ENST00000384096 131 ntBASIC-0.15□□□□□ -2.43
CCDC88AQ3V6T2 SNORA32.3-201ENST00000384772 121 ntBASIC-0.15□□□□□ -2.43
CCDC88AQ3V6T2 MTCO2P33-201ENST00000402100 465 ntBASIC-0.15□□□□□ -2.43
CCDC88AQ3V6T2 RNU6-602P-201ENST00000411155 105 ntBASIC-0.15□□□□□ -2.43
CCDC88AQ3V6T2 MTATP6P13-201ENST00000438531 667 ntBASIC-0.15□□□□□ -2.43
CCDC88AQ3V6T2 RPL17P19-201ENST00000489069 552 ntBASIC-0.15□□□□□ -2.43
CCDC88AQ3V6T2 RNU6-1337P-201ENST00000516525 95 ntBASIC-0.15□□□□□ -2.43
CCDC88AQ3V6T2 RNA5SP268-201ENST00000516828 124 ntBASIC-0.15□□□□□ -2.43
CCDC88AQ3V6T2 AC090617.3-201ENST00000573670 475 ntBASIC-0.15□□□□□ -2.43
CCDC88AQ3V6T2 uc_338.6-201ENST00000613544 171 ntBASIC-0.15□□□□□ -2.43
CCDC88AQ3V6T2 Y_RNA.242-201ENST00000364473 110 ntBASIC-0.16□□□□□ -2.43
CCDC88AQ3V6T2 Y_RNA.372-201ENST00000365599 102 ntBASIC-0.16□□□□□ -2.43
CCDC88AQ3V6T2 RNU6-648P-201ENST00000410190 107 ntBASIC-0.16□□□□□ -2.43
CCDC88AQ3V6T2 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC-0.16□□□□□ -2.43
CCDC88AQ3V6T2 Y_RNA.706-201ENST00000516933 99 ntBASIC-0.16□□□□□ -2.43
CCDC88AQ3V6T2 AL162413.1-201ENST00000603198 110 ntBASIC-0.16□□□□□ -2.43
CCDC88AQ3V6T2 MTRNR2L2-201ENST00000604882 87 ntBASIC-0.16□□□□□ -2.43
CCDC88AQ3V6T2 AC109347.2-201ENST00000610220 349 ntBASIC-0.16□□□□□ -2.43
CCDC88AQ3V6T2 RNU6-595P-201ENST00000363944 107 ntBASIC-0.16□□□□□ -2.44
CCDC88AQ3V6T2 RNU6-522P-201ENST00000364497 107 ntBASIC-0.16□□□□□ -2.44
CCDC88AQ3V6T2 SNORD50B-201ENST00000364995 70 ntBASIC-0.16□□□□□ -2.44
CCDC88AQ3V6T2 SNORA1.2-201ENST00000365189 134 ntBASIC-0.16□□□□□ -2.44
CCDC88AQ3V6T2 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.16□□□□□ -2.44
CCDC88AQ3V6T2 Y_RNA.552-201ENST00000384665 112 ntBASIC-0.16□□□□□ -2.44
CCDC88AQ3V6T2 MIR522-201ENST00000385071 87 ntBASIC-0.16□□□□□ -2.44
CCDC88AQ3V6T2 SNORD37.1-201ENST00000390968 65 ntBASIC-0.16□□□□□ -2.44
CCDC88AQ3V6T2 USP9YP16-201ENST00000430287 407 ntBASIC-0.16□□□□□ -2.44
CCDC88AQ3V6T2 USP9YP23-201ENST00000455085 407 ntBASIC-0.16□□□□□ -2.44
CCDC88AQ3V6T2 RNU7-102P-201ENST00000458948 62 ntBASIC-0.16□□□□□ -2.44
CCDC88AQ3V6T2 snoU13.16-201ENST00000459350 104 ntBASIC-0.16□□□□□ -2.44
CCDC88AQ3V6T2 AC018448.1-201ENST00000552843 316 ntBASIC-0.16□□□□□ -2.44
CCDC88AQ3V6T2 SNORA25.18-201ENST00000607153 114 ntBASIC-0.16□□□□□ -2.44
CCDC88AQ3V6T2 AP001330.5-201ENST00000607176 411 ntBASIC-0.16□□□□□ -2.44
CCDC88AQ3V6T2 U8.17-201ENST00000391292 132 ntBASIC-0.17□□□□□ -2.44
CCDC88AQ3V6T2 SNORA75.6-201ENST00000391318 127 ntBASIC-0.17□□□□□ -2.44
CCDC88AQ3V6T2 ERLEC1P1-201ENST00000433806 578 ntBASIC-0.17□□□□□ -2.44
CCDC88AQ3V6T2 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC-0.17□□□□□ -2.44
CCDC88AQ3V6T2 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC-0.17□□□□□ -2.44
CCDC88AQ3V6T2 AC083798.1-201ENST00000472671 131 ntBASIC-0.17□□□□□ -2.44
CCDC88AQ3V6T2 AC134698.4-201ENST00000523451 826 ntBASIC-0.17□□□□□ -2.44
CCDC88AQ3V6T2 Y_RNA.2-201ENST00000362330 96 ntBASIC-0.18□□□□□ -2.44
CCDC88AQ3V6T2 RNU4-21P-201ENST00000362802 126 ntBASIC-0.18□□□□□ -2.44
CCDC88AQ3V6T2 Y_RNA.368-201ENST00000365547 113 ntBASIC-0.18□□□□□ -2.44
CCDC88AQ3V6T2 RNU6V-201ENST00000384105 107 ntBASIC-0.18□□□□□ -2.44
CCDC88AQ3V6T2 SNORA8.2-201ENST00000384372 139 ntBASIC-0.18□□□□□ -2.44
CCDC88AQ3V6T2 RNU6-332P-201ENST00000391193 108 ntBASIC-0.18□□□□□ -2.44
CCDC88AQ3V6T2 snoU13.2-201ENST00000459201 104 ntBASIC-0.18□□□□□ -2.44
CCDC88AQ3V6T2 AC083904.1-201ENST00000487828 231 ntBASIC-0.18□□□□□ -2.44
CCDC88AQ3V6T2 AC105029.1-201ENST00000520250 669 ntBASIC-0.18□□□□□ -2.44
CCDC88AQ3V6T2 AC093027.1-201ENST00000546698 429 ntBASIC-0.18□□□□□ -2.44
CCDC88AQ3V6T2 AL121757.2-201ENST00000611223 313 ntBASIC-0.18□□□□□ -2.44
CCDC88AQ3V6T2 MIR6863-201ENST00000636112 90 ntBASIC-0.18□□□□□ -2.44
CCDC88AQ3V6T2 Y_RNA.253-201ENST00000364562 112 ntBASIC-0.18□□□□□ -2.44
CCDC88AQ3V6T2 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.18□□□□□ -2.44
CCDC88AQ3V6T2 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC-0.18□□□□□ -2.44
CCDC88AQ3V6T2 AL590632.1-201ENST00000424289 371 ntBASIC-0.18□□□□□ -2.44
CCDC88AQ3V6T2 SNRPGP14-201ENST00000435400 219 ntBASIC-0.18□□□□□ -2.44
CCDC88AQ3V6T2 HMGN2P32-201ENST00000444648 269 ntBASIC-0.18□□□□□ -2.44
CCDC88AQ3V6T2 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC-0.18□□□□□ -2.44
CCDC88AQ3V6T2 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC-0.18□□□□□ -2.44
CCDC88AQ3V6T2 MIR3612-201ENST00000579753 87 ntBASIC-0.18□□□□□ -2.44
CCDC88AQ3V6T2 RNU6-324P-201ENST00000363957 106 ntBASIC-0.19□□□□□ -2.44
CCDC88AQ3V6T2 Y_RNA.231-201ENST00000364358 102 ntBASIC-0.19□□□□□ -2.44
CCDC88AQ3V6T2 Y_RNA.256-201ENST00000364594 104 ntBASIC-0.19□□□□□ -2.44
CCDC88AQ3V6T2 RNA5SP95-201ENST00000410319 137 ntBASIC-0.19□□□□□ -2.44
CCDC88AQ3V6T2 MCFD2P1-201ENST00000417812 300 ntBASIC-0.19□□□□□ -2.44
CCDC88AQ3V6T2 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC-0.19□□□□□ -2.44
CCDC88AQ3V6T2 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC-0.19□□□□□ -2.44
CCDC88AQ3V6T2 RNU2-13P-201ENST00000515909 113 ntBASIC-0.19□□□□□ -2.44
CCDC88AQ3V6T2 SNORA25.10-201ENST00000515926 124 ntBASIC-0.19□□□□□ -2.44
CCDC88AQ3V6T2 RNU6-1038P-201ENST00000516516 104 ntBASIC-0.19□□□□□ -2.44
CCDC88AQ3V6T2 AC005972.2-201ENST00000604690 348 ntBASIC-0.19□□□□□ -2.44
CCDC88AQ3V6T2 AC092954.2-201ENST00000609103 430 ntBASIC-0.19□□□□□ -2.44
CCDC88AQ3V6T2 AC019193.3-201ENST00000609144 554 ntBASIC-0.19□□□□□ -2.44
CCDC88AQ3V6T2 AC006441.5-201ENST00000612680 209 ntBASIC-0.19□□□□□ -2.44
CCDC88AQ3V6T2 RNU6-553P-201ENST00000364047 96 ntBASIC-0.2□□□□□ -2.44
CCDC88AQ3V6T2 RNA5SP517-201ENST00000364724 117 ntBASIC-0.2□□□□□ -2.44
CCDC88AQ3V6T2 RNU6-1126P-201ENST00000384002 107 ntBASIC-0.2□□□□□ -2.44
CCDC88AQ3V6T2 RNU6-1310P-201ENST00000384153 107 ntBASIC-0.2□□□□□ -2.44
CCDC88AQ3V6T2 RNU2-54P-201ENST00000410299 190 ntBASIC-0.2□□□□□ -2.44
CCDC88AQ3V6T2 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC-0.2□□□□□ -2.44
CCDC88AQ3V6T2 AL031667.1-201ENST00000440222 725 ntBASIC-0.2□□□□□ -2.44
CCDC88AQ3V6T2 MIR2115-201ENST00000516657 100 ntBASIC-0.2□□□□□ -2.44
CCDC88AQ3V6T2 RNU6-782P-201ENST00000516852 104 ntBASIC-0.2□□□□□ -2.44
CCDC88AQ3V6T2 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC-0.2□□□□□ -2.44
CCDC88AQ3V6T2 ZNF519P2-201ENST00000557032 169 ntBASIC-0.2□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 188 ms