Protein–RNA interactions for Protein: Q16384

SSX1, Protein SSX1, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX1Q16384 RNU4-49P-201ENST00000516080 140 ntBASIC0.22□□□□□ -2.37
SSX1Q16384 MIR2115-201ENST00000516657 100 ntBASIC0.22□□□□□ -2.37
SSX1Q16384 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.22□□□□□ -2.37
SSX1Q16384 AL355375.2-201ENST00000574825 175 ntBASIC0.22□□□□□ -2.37
SSX1Q16384 MIR5093-201ENST00000583199 100 ntBASIC0.22□□□□□ -2.37
SSX1Q16384 AC012433.1-201ENST00000588916 398 ntBASIC0.22□□□□□ -2.37
SSX1Q16384 AC006380.1-201ENST00000603598 186 ntBASIC0.22□□□□□ -2.37
SSX1Q16384 AC005972.2-201ENST00000604690 348 ntBASIC0.22□□□□□ -2.37
SSX1Q16384 AC103591.3-201ENST00000608684 209 ntBASIC0.22□□□□□ -2.37
SSX1Q16384 AC243829.3-201ENST00000622177 108 ntBASIC0.22□□□□□ -2.37
SSX1Q16384 AC091925.1-201ENST00000623204 462 ntBASIC0.22□□□□□ -2.37
SSX1Q16384 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC0.22□□□□□ -2.37
SSX1Q16384 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.22□□□□□ -2.37
SSX1Q16384 AC090625.1-201ENST00000357130 210 ntBASIC0.21□□□□□ -2.38
SSX1Q16384 Y_RNA.9-201ENST00000362354 101 ntBASIC0.21□□□□□ -2.38
SSX1Q16384 RNU6-593P-201ENST00000364716 112 ntBASIC0.21□□□□□ -2.38
SSX1Q16384 Y_RNA.517-201ENST00000384551 106 ntBASIC0.21□□□□□ -2.38
SSX1Q16384 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.21□□□□□ -2.38
SSX1Q16384 U8.19-201ENST00000459095 133 ntBASIC0.21□□□□□ -2.38
SSX1Q16384 AC011352.1-201ENST00000512300 793 ntBASIC0.21□□□□□ -2.38
SSX1Q16384 RNU6-1012P-201ENST00000516606 109 ntBASIC0.21□□□□□ -2.38
SSX1Q16384 MIR2355-201ENST00000517199 87 ntBASIC0.21□□□□□ -2.38
SSX1Q16384 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.21□□□□□ -2.38
SSX1Q16384 AC015540.1-201ENST00000615828 501 ntBASIC0.21□□□□□ -2.38
SSX1Q16384 AC240442.1-201ENST00000616055 283 ntBASIC0.21□□□□□ -2.38
SSX1Q16384 RMST_2.1-201ENST00000617263 136 ntBASIC0.21□□□□□ -2.38
SSX1Q16384 RNU1-133P-201ENST00000364867 167 ntBASIC0.2□□□□□ -2.38
SSX1Q16384 Y_RNA.370-201ENST00000365589 108 ntBASIC0.2□□□□□ -2.38
SSX1Q16384 SNORA72-201ENST00000384339 132 ntBASIC0.2□□□□□ -2.38
SSX1Q16384 MIR499A-201ENST00000384903 122 ntBASIC0.2□□□□□ -2.38
SSX1Q16384 MIR216A-201ENST00000385063 110 ntBASIC0.2□□□□□ -2.38
SSX1Q16384 RNU2-54P-201ENST00000410299 190 ntBASIC0.2□□□□□ -2.38
SSX1Q16384 MTCO2P27-201ENST00000420740 428 ntBASIC0.2□□□□□ -2.38
SSX1Q16384 RPS29P25-201ENST00000481709 171 ntBASIC0.2□□□□□ -2.38
SSX1Q16384 AC116353.2-201ENST00000505332 712 ntBASIC0.2□□□□□ -2.38
SSX1Q16384 Y_RNA.708-201ENST00000516950 96 ntBASIC0.2□□□□□ -2.38
SSX1Q16384 Y_RNA.714-201ENST00000517065 90 ntBASIC0.2□□□□□ -2.38
SSX1Q16384 MIR1244-1-201ENST00000612829 85 ntBASIC0.2□□□□□ -2.38
SSX1Q16384 AC015726.2-201ENST00000620112 122 ntBASIC0.2□□□□□ -2.38
SSX1Q16384 MIR1244-3-201ENST00000635744 85 ntBASIC0.2□□□□□ -2.38
SSX1Q16384 MIR1244-2-201ENST00000636449 85 ntBASIC0.2□□□□□ -2.38
SSX1Q16384 MIR1244-4-202ENST00000636813 85 ntBASIC0.2□□□□□ -2.38
SSX1Q16384 MIR18A-201ENST00000362310 71 ntBASIC0.19□□□□□ -2.38
SSX1Q16384 Y_RNA.194-201ENST00000363985 102 ntBASIC0.19□□□□□ -2.38
SSX1Q16384 RNU6-396P-201ENST00000365369 105 ntBASIC0.19□□□□□ -2.38
SSX1Q16384 Y_RNA.554-201ENST00000384672 102 ntBASIC0.19□□□□□ -2.38
SSX1Q16384 MIR548K-201ENST00000408406 116 ntBASIC0.19□□□□□ -2.38
SSX1Q16384 MTCO3P10-201ENST00000455912 772 ntBASIC0.19□□□□□ -2.38
SSX1Q16384 RPL7P42-201ENST00000481005 679 ntBASIC0.19□□□□□ -2.38
SSX1Q16384 AC108740.1-201ENST00000498629 225 ntBASIC0.19□□□□□ -2.38
SSX1Q16384 AC093534.1-201ENST00000504977 132 ntBASIC0.19□□□□□ -2.38
SSX1Q16384 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC0.19□□□□□ -2.38
SSX1Q16384 AC024909.2-201ENST00000553035 286 ntBASIC0.19□□□□□ -2.38
SSX1Q16384 MIR4711-201ENST00000578274 70 ntBASIC0.19□□□□□ -2.38
SSX1Q16384 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC0.19□□□□□ -2.38
SSX1Q16384 AC092794.2-201ENST00000620933 563 ntBASIC0.19□□□□□ -2.38
SSX1Q16384 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.19□□□□□ -2.38
SSX1Q16384 RNA5SP432-201ENST00000362480 116 ntBASIC0.18□□□□□ -2.38
SSX1Q16384 RNU6-580P-201ENST00000365159 107 ntBASIC0.18□□□□□ -2.38
SSX1Q16384 Y_RNA.450-201ENST00000384198 113 ntBASIC0.18□□□□□ -2.38
SSX1Q16384 MIR570-201ENST00000384917 97 ntBASIC0.18□□□□□ -2.38
SSX1Q16384 MIR520H-201ENST00000385126 88 ntBASIC0.18□□□□□ -2.38
SSX1Q16384 RNU6-1199P-201ENST00000411249 104 ntBASIC0.18□□□□□ -2.38
SSX1Q16384 RPS3AP52-201ENST00000435639 297 ntBASIC0.18□□□□□ -2.38
SSX1Q16384 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.18□□□□□ -2.38
SSX1Q16384 CHEK2P4-201ENST00000450340 246 ntBASIC0.18□□□□□ -2.38
SSX1Q16384 RPL17P19-201ENST00000489069 552 ntBASIC0.18□□□□□ -2.38
SSX1Q16384 RNU6-436P-201ENST00000516171 114 ntBASIC0.18□□□□□ -2.38
SSX1Q16384 AC060780.3-201ENST00000589464 80 ntBASIC0.18□□□□□ -2.38
SSX1Q16384 AC027514.1-201ENST00000588561 1603 ntBASIC0.17□□□□□ -2.38
SSX1Q16384 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.17□□□□□ -2.38
SSX1Q16384 SNORD14E-201ENST00000364009 85 ntBASIC0.17□□□□□ -2.38
SSX1Q16384 RNU4-75P-201ENST00000364621 146 ntBASIC0.17□□□□□ -2.38
SSX1Q16384 Y_RNA.295-201ENST00000364918 102 ntBASIC0.17□□□□□ -2.38
SSX1Q16384 RNU6-1327P-201ENST00000365302 105 ntBASIC0.17□□□□□ -2.38
SSX1Q16384 Y_RNA.404-201ENST00000383978 102 ntBASIC0.17□□□□□ -2.38
SSX1Q16384 SNORD38C-201ENST00000384381 69 ntBASIC0.17□□□□□ -2.38
SSX1Q16384 MIR548F5-201ENST00000408421 86 ntBASIC0.17□□□□□ -2.38
SSX1Q16384 MTND3P10-201ENST00000450967 341 ntBASIC0.17□□□□□ -2.38
SSX1Q16384 MIR2053-201ENST00000459295 91 ntBASIC0.17□□□□□ -2.38
SSX1Q16384 snoU13.21-201ENST00000459368 105 ntBASIC0.17□□□□□ -2.38
SSX1Q16384 RNU6-830P-201ENST00000516353 107 ntBASIC0.17□□□□□ -2.38
SSX1Q16384 MIR548AO-201ENST00000579992 96 ntBASIC0.17□□□□□ -2.38
SSX1Q16384 AC005899.2-201ENST00000584353 90 ntBASIC0.17□□□□□ -2.38
SSX1Q16384 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.17□□□□□ -2.38
SSX1Q16384 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.17□□□□□ -2.38
SSX1Q16384 MIR377-201ENST00000362145 69 ntBASIC0.16□□□□□ -2.38
SSX1Q16384 Y_RNA.4-201ENST00000362333 112 ntBASIC0.16□□□□□ -2.38
SSX1Q16384 SNORD45.3-201ENST00000363836 72 ntBASIC0.16□□□□□ -2.38
SSX1Q16384 RNU6-324P-201ENST00000363957 106 ntBASIC0.16□□□□□ -2.38
SSX1Q16384 RNU4-45P-201ENST00000365469 141 ntBASIC0.16□□□□□ -2.38
SSX1Q16384 Y_RNA.376-201ENST00000365638 108 ntBASIC0.16□□□□□ -2.38
SSX1Q16384 RNU6-926P-201ENST00000384075 107 ntBASIC0.16□□□□□ -2.38
SSX1Q16384 RNU6-601P-201ENST00000384540 107 ntBASIC0.16□□□□□ -2.38
SSX1Q16384 Y_RNA.573-201ENST00000384763 105 ntBASIC0.16□□□□□ -2.38
SSX1Q16384 MIR520F-201ENST00000384824 87 ntBASIC0.16□□□□□ -2.38
SSX1Q16384 MT-TN-201ENST00000387400 73 ntBASIC0.16□□□□□ -2.38
SSX1Q16384 MIR936-201ENST00000401264 98 ntBASIC0.16□□□□□ -2.38
SSX1Q16384 MTND4P28-201ENST00000426217 387 ntBASIC0.16□□□□□ -2.38
SSX1Q16384 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC0.16□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms