Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC055872.1-201ENST00000570978 278 ntBASIC0.46□□□□□ -2.34
FOXA1P55317 AC005899.2-201ENST00000584353 90 ntBASIC0.46□□□□□ -2.34
FOXA1P55317 MIR4762-201ENST00000585261 75 ntBASIC0.46□□□□□ -2.34
FOXA1P55317 AC007014.2-201ENST00000615581 479 ntBASIC0.46□□□□□ -2.34
FOXA1P55317 AC007742.2-201ENST00000618226 398 ntBASIC0.46□□□□□ -2.34
FOXA1P55317 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
FOXA1P55317 MIR103A2-201ENST00000362154 78 ntBASIC0.45□□□□□ -2.34
FOXA1P55317 SNORA25.3-201ENST00000363205 127 ntBASIC0.45□□□□□ -2.34
FOXA1P55317 RNU6-99P-201ENST00000364721 107 ntBASIC0.45□□□□□ -2.34
FOXA1P55317 RNU6-1335P-201ENST00000365426 107 ntBASIC0.45□□□□□ -2.34
FOXA1P55317 SNORA75.4-201ENST00000391278 119 ntBASIC0.45□□□□□ -2.34
FOXA1P55317 MIR1185-1-201ENST00000408598 86 ntBASIC0.45□□□□□ -2.34
FOXA1P55317 AC092628.1-201ENST00000436250 252 ntBASIC0.45□□□□□ -2.34
FOXA1P55317 MIR2053-201ENST00000459295 91 ntBASIC0.45□□□□□ -2.34
FOXA1P55317 AC116353.2-201ENST00000505332 712 ntBASIC0.45□□□□□ -2.34
FOXA1P55317 RNU7-41P-201ENST00000515917 61 ntBASIC0.45□□□□□ -2.34
FOXA1P55317 SNORA74.3-201ENST00000517108 154 ntBASIC0.45□□□□□ -2.34
FOXA1P55317 MIR2355-201ENST00000517199 87 ntBASIC0.45□□□□□ -2.34
FOXA1P55317 AF235103.2-201ENST00000525753 346 ntBASIC0.45□□□□□ -2.34
FOXA1P55317 AC023827.1-201ENST00000569247 97 ntBASIC0.45□□□□□ -2.34
FOXA1P55317 MIR1273G-201ENST00000577677 100 ntBASIC0.45□□□□□ -2.34
FOXA1P55317 AL353765.1-201ENST00000605514 183 ntBASIC0.45□□□□□ -2.34
FOXA1P55317 AC104465.1-201ENST00000611365 139 ntBASIC0.45□□□□□ -2.34
FOXA1P55317 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC0.45□□□□□ -2.34
FOXA1P55317 AC002553.4-201ENST00000616896 331 ntBASIC0.45□□□□□ -2.34
FOXA1P55317 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.45□□□□□ -2.34
FOXA1P55317 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.45□□□□□ -2.34
FOXA1P55317 RNU6-926P-201ENST00000384075 107 ntBASIC0.44□□□□□ -2.34
FOXA1P55317 RNU6-1297P-201ENST00000384415 104 ntBASIC0.44□□□□□ -2.34
FOXA1P55317 SNORD116-4-201ENST00000384733 96 ntBASIC0.44□□□□□ -2.34
FOXA1P55317 MIR520C-201ENST00000385005 87 ntBASIC0.44□□□□□ -2.34
FOXA1P55317 MIR136-201ENST00000385207 82 ntBASIC0.44□□□□□ -2.34
FOXA1P55317 AL031003.1-201ENST00000404229 172 ntBASIC0.44□□□□□ -2.34
FOXA1P55317 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.44□□□□□ -2.34
FOXA1P55317 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.44□□□□□ -2.34
FOXA1P55317 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.44□□□□□ -2.34
FOXA1P55317 SNORA25.10-201ENST00000515926 124 ntBASIC0.44□□□□□ -2.34
FOXA1P55317 RNU6-496P-201ENST00000516145 99 ntBASIC0.44□□□□□ -2.34
FOXA1P55317 RNU6-307P-201ENST00000516743 106 ntBASIC0.44□□□□□ -2.34
FOXA1P55317 RNU6-1213P-201ENST00000517075 94 ntBASIC0.44□□□□□ -2.34
FOXA1P55317 AC109810.1-201ENST00000534066 224 ntBASIC0.44□□□□□ -2.34
FOXA1P55317 AC131055.1-201ENST00000584626 316 ntBASIC0.44□□□□□ -2.34
FOXA1P55317 SEPT14P17-201ENST00000617978 177 ntBASIC0.44□□□□□ -2.34
FOXA1P55317 AC010487.4-201ENST00000637027 61 ntBASIC0.44□□□□□ -2.34
FOXA1P55317 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.43□□□□□ -2.34
FOXA1P55317 Y_RNA.101-201ENST00000363154 102 ntBASIC0.43□□□□□ -2.34
FOXA1P55317 Y_RNA.172-201ENST00000363765 102 ntBASIC0.43□□□□□ -2.34
FOXA1P55317 Y_RNA.253-201ENST00000364562 112 ntBASIC0.43□□□□□ -2.34
FOXA1P55317 AC117470.1-201ENST00000381974 330 ntBASIC0.43□□□□□ -2.34
FOXA1P55317 AL390729.2-201ENST00000416137 156 ntBASIC0.43□□□□□ -2.34
FOXA1P55317 MTND4P28-201ENST00000426217 387 ntBASIC0.43□□□□□ -2.34
FOXA1P55317 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC0.43□□□□□ -2.34
FOXA1P55317 AC069439.1-201ENST00000494739 167 ntBASIC0.43□□□□□ -2.34
FOXA1P55317 AC011352.1-201ENST00000512300 793 ntBASIC0.43□□□□□ -2.34
FOXA1P55317 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.43□□□□□ -2.34
FOXA1P55317 RNU6-120P-201ENST00000516077 103 ntBASIC0.43□□□□□ -2.34
FOXA1P55317 SNORA18.7-201ENST00000516910 131 ntBASIC0.43□□□□□ -2.34
FOXA1P55317 MIR4764-201ENST00000580680 88 ntBASIC0.43□□□□□ -2.34
FOXA1P55317 AC006380.1-201ENST00000603598 186 ntBASIC0.43□□□□□ -2.34
FOXA1P55317 AC240442.1-201ENST00000616055 283 ntBASIC0.43□□□□□ -2.34
FOXA1P55317 AC087588.2-201ENST00000617667 426 ntBASIC0.43□□□□□ -2.34
FOXA1P55317 SNORD14.1-201ENST00000365609 90 ntBASIC0.42□□□□□ -2.34
FOXA1P55317 RNU6-110P-201ENST00000384508 104 ntBASIC0.42□□□□□ -2.34
FOXA1P55317 MIR625-201ENST00000385047 85 ntBASIC0.42□□□□□ -2.34
FOXA1P55317 MIR522-201ENST00000385071 87 ntBASIC0.42□□□□□ -2.34
FOXA1P55317 SNORA69.1-201ENST00000390904 137 ntBASIC0.42□□□□□ -2.34
FOXA1P55317 SNORD89-201ENST00000390981 114 ntBASIC0.42□□□□□ -2.34
FOXA1P55317 RNU2-54P-201ENST00000410299 190 ntBASIC0.42□□□□□ -2.34
FOXA1P55317 RNU2-61P-201ENST00000411069 191 ntBASIC0.42□□□□□ -2.34
FOXA1P55317 MLLT10P1-201ENST00000418346 262 ntBASIC0.42□□□□□ -2.34
FOXA1P55317 AC067940.1-201ENST00000458411 300 ntBASIC0.42□□□□□ -2.34
FOXA1P55317 COX6CP6-201ENST00000490840 228 ntBASIC0.42□□□□□ -2.34
FOXA1P55317 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.42□□□□□ -2.34
FOXA1P55317 AC113410.1-201ENST00000505029 247 ntBASIC0.42□□□□□ -2.34
FOXA1P55317 RN7SKP164-201ENST00000516138 266 ntBASIC0.42□□□□□ -2.34
FOXA1P55317 RNU6-229P-201ENST00000516614 102 ntBASIC0.42□□□□□ -2.34
FOXA1P55317 SNORD45.4-201ENST00000516629 73 ntBASIC0.42□□□□□ -2.34
FOXA1P55317 AC060780.3-201ENST00000589464 80 ntBASIC0.42□□□□□ -2.34
FOXA1P55317 AC093783.1-201ENST00000612976 329 ntBASIC0.42□□□□□ -2.34
FOXA1P55317 AC243829.3-201ENST00000622177 108 ntBASIC0.42□□□□□ -2.34
FOXA1P55317 AL669831.3-213ENST00000636676 183 ntBASIC0.42□□□□□ -2.34
FOXA1P55317 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.42□□□□□ -2.34
FOXA1P55317 RNU6-1084P-201ENST00000362498 107 ntBASIC0.41□□□□□ -2.34
FOXA1P55317 Y_RNA.72-201ENST00000362894 103 ntBASIC0.41□□□□□ -2.34
FOXA1P55317 SNORD99-201ENST00000408612 74 ntBASIC0.41□□□□□ -2.34
FOXA1P55317 Y_RNA.592-201ENST00000410274 109 ntBASIC0.41□□□□□ -2.34
FOXA1P55317 RNU4-14P-201ENST00000410858 122 ntBASIC0.41□□□□□ -2.34
FOXA1P55317 MRPS18CP6-201ENST00000423587 223 ntBASIC0.41□□□□□ -2.34
FOXA1P55317 U7.7-201ENST00000459276 60 ntBASIC0.41□□□□□ -2.34
FOXA1P55317 RNU4ATAC7P-201ENST00000516280 125 ntBASIC0.41□□□□□ -2.34
FOXA1P55317 RNA5SP121-201ENST00000516537 101 ntBASIC0.41□□□□□ -2.34
FOXA1P55317 RNU7-30P-201ENST00000516835 62 ntBASIC0.41□□□□□ -2.34
FOXA1P55317 MTND4LP26-201ENST00000518144 282 ntBASIC0.41□□□□□ -2.34
FOXA1P55317 AC025627.3-201ENST00000582078 182 ntBASIC0.41□□□□□ -2.34
FOXA1P55317 7SK.10-201ENST00000621414 298 ntBASIC0.41□□□□□ -2.34
FOXA1P55317 AL589743.1-201ENST00000551932 2712 ntBASIC0.41□□□□□ -2.34
FOXA1P55317 RNU6-324P-201ENST00000363957 106 ntBASIC0.4□□□□□ -2.35
FOXA1P55317 RNA5SP48-201ENST00000363969 126 ntBASIC0.4□□□□□ -2.35
FOXA1P55317 Y_RNA.577-201ENST00000384794 101 ntBASIC0.4□□□□□ -2.35
FOXA1P55317 MIR15B-201ENST00000385045 98 ntBASIC0.4□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 179.8 ms