Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.85□□□□□ -2.11
HOXD3P31249 MIR5094-201ENST00000578766 85 ntBASIC1.85□□□□□ -2.11
HOXD3P31249 MIR4648-201ENST00000580107 72 ntBASIC1.85□□□□□ -2.11
HOXD3P31249 MIR4744-201ENST00000581563 82 ntBASIC1.85□□□□□ -2.11
HOXD3P31249 AC046143.2-201ENST00000609789 160 ntBASIC1.85□□□□□ -2.11
HOXD3P31249 MIR1291-201ENST00000627649 87 ntBASIC1.85□□□□□ -2.11
HOXD3P31249 AC021753.1-201ENST00000635724 168 ntBASIC1.85□□□□□ -2.11
HOXD3P31249 AP006437.1-201ENST00000641440 3685 ntBASIC1.84□□□□□ -2.11
HOXD3P31249 AC018630.2-201ENST00000534866 2403 ntBASIC1.84□□□□□ -2.11
HOXD3P31249 RNU6-674P-201ENST00000363831 107 ntBASIC1.84□□□□□ -2.11
HOXD3P31249 RNU6-578P-201ENST00000390980 103 ntBASIC1.84□□□□□ -2.11
HOXD3P31249 RNA5SP109-201ENST00000391010 116 ntBASIC1.84□□□□□ -2.11
HOXD3P31249 AL606845.1-201ENST00000404881 255 ntBASIC1.84□□□□□ -2.11
HOXD3P31249 MIR1289-2-201ENST00000408360 111 ntBASIC1.84□□□□□ -2.11
HOXD3P31249 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.84□□□□□ -2.11
HOXD3P31249 RN7SKP164-201ENST00000516138 266 ntBASIC1.84□□□□□ -2.11
HOXD3P31249 SNORA31.25-201ENST00000517242 134 ntBASIC1.84□□□□□ -2.11
HOXD3P31249 IGKV3-31-201ENST00000523109 329 ntBASIC1.84□□□□□ -2.11
HOXD3P31249 AC084364.2-201ENST00000546924 395 ntBASIC1.84□□□□□ -2.11
HOXD3P31249 RPL23AP91-201ENST00000569211 455 ntBASIC1.84□□□□□ -2.11
HOXD3P31249 AL049861.1-201ENST00000603130 150 ntBASIC1.84□□□□□ -2.11
HOXD3P31249 AC022217.4-201ENST00000604389 163 ntBASIC1.84□□□□□ -2.11
HOXD3P31249 AC103810.6-201ENST00000606708 136 ntBASIC1.84□□□□□ -2.11
HOXD3P31249 MIR6840-201ENST00000611937 71 ntBASIC1.84□□□□□ -2.11
HOXD3P31249 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.84□□□□□ -2.11
HOXD3P31249 MIR6873-201ENST00000622788 63 ntBASIC1.84□□□□□ -2.11
HOXD3P31249 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.84□□□□□ -2.12
HOXD3P31249 AC100821.1-201ENST00000523153 2479 ntBASIC1.83□□□□□ -2.12
HOXD3P31249 Y_RNA.75-201ENST00000362927 97 ntBASIC1.83□□□□□ -2.12
HOXD3P31249 Y_RNA.121-201ENST00000363309 113 ntBASIC1.83□□□□□ -2.12
HOXD3P31249 RNU6-1209P-201ENST00000363655 107 ntBASIC1.83□□□□□ -2.12
HOXD3P31249 Y_RNA.203-201ENST00000364106 102 ntBASIC1.83□□□□□ -2.12
HOXD3P31249 Y_RNA.796-201ENST00000364268 102 ntBASIC1.83□□□□□ -2.12
HOXD3P31249 RNU6-818P-201ENST00000364837 108 ntBASIC1.83□□□□□ -2.12
HOXD3P31249 Y_RNA.799-201ENST00000364992 102 ntBASIC1.83□□□□□ -2.12
HOXD3P31249 MIR616-201ENST00000385293 97 ntBASIC1.83□□□□□ -2.12
HOXD3P31249 Y_RNA.587-201ENST00000391210 103 ntBASIC1.83□□□□□ -2.12
HOXD3P31249 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.83□□□□□ -2.12
HOXD3P31249 SEPT7P4-201ENST00000437076 306 ntBASIC1.83□□□□□ -2.12
HOXD3P31249 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
HOXD3P31249 RPS26P45-201ENST00000471748 340 ntBASIC1.83□□□□□ -2.12
HOXD3P31249 AC026436.1-201ENST00000510537 270 ntBASIC1.83□□□□□ -2.12
HOXD3P31249 AC005786.1-201ENST00000588553 154 ntBASIC1.83□□□□□ -2.12
HOXD3P31249 AC078899.2-201ENST00000595282 212 ntBASIC1.83□□□□□ -2.12
HOXD3P31249 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.83□□□□□ -2.12
HOXD3P31249 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.83□□□□□ -2.12
HOXD3P31249 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
HOXD3P31249 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.82□□□□□ -2.12
HOXD3P31249 AL596028.1-201ENST00000326971 197 ntBASIC1.82□□□□□ -2.12
HOXD3P31249 SNORA1B-201ENST00000362535 133 ntBASIC1.82□□□□□ -2.12
HOXD3P31249 SNORA25.6-201ENST00000364121 118 ntBASIC1.82□□□□□ -2.12
HOXD3P31249 RNU6-275P-201ENST00000364910 107 ntBASIC1.82□□□□□ -2.12
HOXD3P31249 Y_RNA.464-201ENST00000384282 110 ntBASIC1.82□□□□□ -2.12
HOXD3P31249 MIR520G-201ENST00000385064 90 ntBASIC1.82□□□□□ -2.12
HOXD3P31249 RNU6-394P-201ENST00000410735 107 ntBASIC1.82□□□□□ -2.12
HOXD3P31249 Y_RNA.622-201ENST00000411091 108 ntBASIC1.82□□□□□ -2.12
HOXD3P31249 RPS27P1-201ENST00000450552 247 ntBASIC1.82□□□□□ -2.12
HOXD3P31249 SNRPGP8-201ENST00000454064 226 ntBASIC1.82□□□□□ -2.12
HOXD3P31249 AC055731.1-201ENST00000474387 401 ntBASIC1.82□□□□□ -2.12
HOXD3P31249 RNU6-341P-201ENST00000516973 96 ntBASIC1.82□□□□□ -2.12
HOXD3P31249 MTND5P41-201ENST00000517498 206 ntBASIC1.82□□□□□ -2.12
HOXD3P31249 AC109810.1-201ENST00000534066 224 ntBASIC1.82□□□□□ -2.12
HOXD3P31249 MIR4529-201ENST00000578110 78 ntBASIC1.82□□□□□ -2.12
HOXD3P31249 AC067747.1-201ENST00000608026 250 ntBASIC1.82□□□□□ -2.12
HOXD3P31249 RNU6-103P-201ENST00000363686 107 ntBASIC1.81□□□□□ -2.12
HOXD3P31249 SNORA16B-201ENST00000364674 135 ntBASIC1.81□□□□□ -2.12
HOXD3P31249 RNA5SP501-201ENST00000410990 112 ntBASIC1.81□□□□□ -2.12
HOXD3P31249 AC245047.4-201ENST00000433189 144 ntBASIC1.81□□□□□ -2.12
HOXD3P31249 AC018634.1-201ENST00000437554 401 ntBASIC1.81□□□□□ -2.12
HOXD3P31249 RPS27P21-201ENST00000486977 252 ntBASIC1.81□□□□□ -2.12
HOXD3P31249 RNU2-19P-201ENST00000517288 84 ntBASIC1.81□□□□□ -2.12
HOXD3P31249 AC024995.1-201ENST00000523014 93 ntBASIC1.81□□□□□ -2.12
HOXD3P31249 MIR3144-201ENST00000579460 79 ntBASIC1.81□□□□□ -2.12
HOXD3P31249 MIR5688-201ENST00000580619 83 ntBASIC1.81□□□□□ -2.12
HOXD3P31249 AC016717.2-201ENST00000609089 5141 ntBASIC1.81□□□□□ -2.12
HOXD3P31249 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.81□□□□□ -2.12
HOXD3P31249 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC1.81□□□□□ -2.12
HOXD3P31249 ICE2P2-201ENST00000483823 2787 ntBASIC1.81□□□□□ -2.12
HOXD3P31249 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC1.8□□□□□ -2.12
HOXD3P31249 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.8□□□□□ -2.12
HOXD3P31249 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
HOXD3P31249 Y_RNA.170-201ENST00000363746 110 ntBASIC1.8□□□□□ -2.12
HOXD3P31249 RNU6-1130P-201ENST00000365434 107 ntBASIC1.8□□□□□ -2.12
HOXD3P31249 Y_RNA.398-201ENST00000383952 99 ntBASIC1.8□□□□□ -2.12
HOXD3P31249 RNA5SP181-201ENST00000410246 98 ntBASIC1.8□□□□□ -2.12
HOXD3P31249 MLLT10P1-201ENST00000418346 262 ntBASIC1.8□□□□□ -2.12
HOXD3P31249 AL356320.1-201ENST00000429616 163 ntBASIC1.8□□□□□ -2.12
HOXD3P31249 AL591806.2-201ENST00000433122 173 ntBASIC1.8□□□□□ -2.12
HOXD3P31249 AL121914.1-201ENST00000450188 156 ntBASIC1.8□□□□□ -2.12
HOXD3P31249 AL021707.8-201ENST00000609428 183 ntBASIC1.8□□□□□ -2.12
HOXD3P31249 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.8□□□□□ -2.12
HOXD3P31249 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
HOXD3P31249 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC1.8□□□□□ -2.12
HOXD3P31249 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.8□□□□□ -2.12
HOXD3P31249 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
HOXD3P31249 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC1.8□□□□□ -2.12
HOXD3P31249 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.79□□□□□ -2.12
HOXD3P31249 Y_RNA.23-201ENST00000362496 106 ntBASIC1.79□□□□□ -2.12
HOXD3P31249 Y_RNA.253-201ENST00000364562 112 ntBASIC1.79□□□□□ -2.12
HOXD3P31249 RNU6-312P-201ENST00000364629 107 ntBASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms