Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 Y_RNA.439-201ENST00000384119 94 ntBASIC0.98□□□□□ -2.25
SDC1P18827 SNORA70.7-201ENST00000384159 133 ntBASIC0.98□□□□□ -2.25
SDC1P18827 RNU6-937P-201ENST00000384325 106 ntBASIC0.98□□□□□ -2.25
SDC1P18827 SNORA25-201ENST00000384384 134 ntBASIC0.98□□□□□ -2.25
SDC1P18827 RNU4-30P-201ENST00000410245 143 ntBASIC0.98□□□□□ -2.25
SDC1P18827 RPL23AP36-201ENST00000413895 458 ntBASIC0.98□□□□□ -2.25
SDC1P18827 RNU6-237P-201ENST00000515985 71 ntBASIC0.98□□□□□ -2.25
SDC1P18827 RNU6-947P-201ENST00000516264 106 ntBASIC0.98□□□□□ -2.25
SDC1P18827 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
SDC1P18827 AC022616.4-201ENST00000522985 181 ntBASIC0.98□□□□□ -2.25
SDC1P18827 AC040926.1-201ENST00000530195 238 ntBASIC0.98□□□□□ -2.25
SDC1P18827 FAM106DP-201ENST00000586416 501 ntBASIC0.98□□□□□ -2.25
SDC1P18827 AC011373.1-201ENST00000607270 237 ntBASIC0.98□□□□□ -2.25
SDC1P18827 MIR6078-201ENST00000611069 100 ntBASIC0.98□□□□□ -2.25
SDC1P18827 AC027335.2-201ENST00000624030 375 ntBASIC0.98□□□□□ -2.25
SDC1P18827 MIR369-201ENST00000362155 70 ntBASIC0.97□□□□□ -2.25
SDC1P18827 Y_RNA.143-201ENST00000363520 106 ntBASIC0.97□□□□□ -2.25
SDC1P18827 Y_RNA.471-201ENST00000384312 102 ntBASIC0.97□□□□□ -2.25
SDC1P18827 SNORA72-201ENST00000384339 132 ntBASIC0.97□□□□□ -2.25
SDC1P18827 Y_RNA.509-201ENST00000384506 99 ntBASIC0.97□□□□□ -2.25
SDC1P18827 Y_RNA.551-201ENST00000384661 102 ntBASIC0.97□□□□□ -2.25
SDC1P18827 MIR522-201ENST00000385071 87 ntBASIC0.97□□□□□ -2.25
SDC1P18827 RNU6-308P-201ENST00000390957 107 ntBASIC0.97□□□□□ -2.25
SDC1P18827 RNU6-710P-201ENST00000410424 105 ntBASIC0.97□□□□□ -2.25
SDC1P18827 RNU6-1054P-201ENST00000411293 104 ntBASIC0.97□□□□□ -2.25
SDC1P18827 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.97□□□□□ -2.25
SDC1P18827 U8.20-201ENST00000459445 131 ntBASIC0.97□□□□□ -2.25
SDC1P18827 RNU6-475P-201ENST00000516073 104 ntBASIC0.97□□□□□ -2.25
SDC1P18827 RNA5SP404-201ENST00000517118 132 ntBASIC0.97□□□□□ -2.25
SDC1P18827 MIR3145-201ENST00000580727 82 ntBASIC0.97□□□□□ -2.25
SDC1P18827 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.97□□□□□ -2.25
SDC1P18827 BX284668.6-201ENST00000606899 438 ntBASIC0.97□□□□□ -2.25
SDC1P18827 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC0.97□□□□□ -2.25
SDC1P18827 Y_RNA.336-201ENST00000365307 109 ntBASIC0.96□□□□□ -2.26
SDC1P18827 Y_RNA.341-201ENST00000365341 102 ntBASIC0.96□□□□□ -2.26
SDC1P18827 Y_RNA.363-201ENST00000365529 113 ntBASIC0.96□□□□□ -2.26
SDC1P18827 Y_RNA.368-201ENST00000365547 113 ntBASIC0.96□□□□□ -2.26
SDC1P18827 SNORD42.2-201ENST00000365570 69 ntBASIC0.96□□□□□ -2.26
SDC1P18827 SNORA22-201ENST00000383907 134 ntBASIC0.96□□□□□ -2.26
SDC1P18827 SNORD63-201ENST00000384262 68 ntBASIC0.96□□□□□ -2.26
SDC1P18827 Y_RNA.526-201ENST00000384572 110 ntBASIC0.96□□□□□ -2.26
SDC1P18827 SNORA22C-201ENST00000384614 134 ntBASIC0.96□□□□□ -2.26
SDC1P18827 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.96□□□□□ -2.26
SDC1P18827 MIR1302-11-201ENST00000408051 138 ntBASIC0.96□□□□□ -2.26
SDC1P18827 MIR1302-9-201ENST00000408365 138 ntBASIC0.96□□□□□ -2.26
SDC1P18827 MIR1302-10-201ENST00000408734 138 ntBASIC0.96□□□□□ -2.26
SDC1P18827 AC245047.7-201ENST00000440265 293 ntBASIC0.96□□□□□ -2.26
SDC1P18827 MTND4P19-201ENST00000446659 478 ntBASIC0.96□□□□□ -2.26
SDC1P18827 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.96□□□□□ -2.26
SDC1P18827 RNU6-1170P-201ENST00000515974 106 ntBASIC0.96□□□□□ -2.26
SDC1P18827 RNU7-40P-201ENST00000516397 64 ntBASIC0.96□□□□□ -2.26
SDC1P18827 MIR4295-201ENST00000585286 85 ntBASIC0.96□□□□□ -2.26
SDC1P18827 AL357312.1-201ENST00000603879 298 ntBASIC0.96□□□□□ -2.26
SDC1P18827 AC103810.9-201ENST00000606688 112 ntBASIC0.96□□□□□ -2.26
SDC1P18827 MIR1302-2-201ENST00000607096 138 ntBASIC0.96□□□□□ -2.26
SDC1P18827 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.96□□□□□ -2.26
SDC1P18827 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.96□□□□□ -2.26
SDC1P18827 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
SDC1P18827 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC0.96□□□□□ -2.26
SDC1P18827 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.95□□□□□ -2.26
SDC1P18827 Y_RNA.31-201ENST00000362574 102 ntBASIC0.95□□□□□ -2.26
SDC1P18827 RNU4-50P-201ENST00000364361 141 ntBASIC0.95□□□□□ -2.26
SDC1P18827 RNU4-38P-201ENST00000364472 129 ntBASIC0.95□□□□□ -2.26
SDC1P18827 SNORD14.1-201ENST00000365609 90 ntBASIC0.95□□□□□ -2.26
SDC1P18827 RNU6-1323P-201ENST00000384025 107 ntBASIC0.95□□□□□ -2.26
SDC1P18827 Y_RNA.456-201ENST00000384232 111 ntBASIC0.95□□□□□ -2.26
SDC1P18827 RNU6-910P-201ENST00000390844 107 ntBASIC0.95□□□□□ -2.26
SDC1P18827 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.95□□□□□ -2.26
SDC1P18827 MIR1298-201ENST00000408783 112 ntBASIC0.95□□□□□ -2.26
SDC1P18827 AC022028.1-201ENST00000412054 408 ntBASIC0.95□□□□□ -2.26
SDC1P18827 MLLT10P1-201ENST00000418346 262 ntBASIC0.95□□□□□ -2.26
SDC1P18827 Y_RNA.639-201ENST00000458981 102 ntBASIC0.95□□□□□ -2.26
SDC1P18827 OR2A41P-201ENST00000473586 105 ntBASIC0.95□□□□□ -2.26
SDC1P18827 AC087343.1-201ENST00000477341 475 ntBASIC0.95□□□□□ -2.26
SDC1P18827 AC108729.3-201ENST00000513484 108 ntBASIC0.95□□□□□ -2.26
SDC1P18827 SNORA31.4-201ENST00000516049 129 ntBASIC0.95□□□□□ -2.26
SDC1P18827 SNORD111.1-201ENST00000516421 86 ntBASIC0.95□□□□□ -2.26
SDC1P18827 SNORA70.22-201ENST00000517160 124 ntBASIC0.95□□□□□ -2.26
SDC1P18827 AC136932.1-201ENST00000574771 208 ntBASIC0.95□□□□□ -2.26
SDC1P18827 AL096861.1-201ENST00000610899 123 ntBASIC0.95□□□□□ -2.26
SDC1P18827 Y_RNA.286-201ENST00000364813 102 ntBASIC0.94□□□□□ -2.26
SDC1P18827 RNU6-21P-201ENST00000384710 107 ntBASIC0.94□□□□□ -2.26
SDC1P18827 MIR222-201ENST00000384992 110 ntBASIC0.94□□□□□ -2.26
SDC1P18827 MIR452-201ENST00000385020 85 ntBASIC0.94□□□□□ -2.26
SDC1P18827 snoU13.25-201ENST00000458945 104 ntBASIC0.94□□□□□ -2.26
SDC1P18827 HMGN1P7-201ENST00000491722 313 ntBASIC0.94□□□□□ -2.26
SDC1P18827 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.94□□□□□ -2.26
SDC1P18827 SNORD116-28-201ENST00000516123 91 ntBASIC0.94□□□□□ -2.26
SDC1P18827 Y_RNA.713-201ENST00000517013 96 ntBASIC0.94□□□□□ -2.26
SDC1P18827 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC0.94□□□□□ -2.26
SDC1P18827 HSPE1P19-201ENST00000603327 295 ntBASIC0.94□□□□□ -2.26
SDC1P18827 snoU13.31-201ENST00000607291 104 ntBASIC0.94□□□□□ -2.26
SDC1P18827 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.94□□□□□ -2.26
SDC1P18827 Y_RNA.813-201ENST00000364639 102 ntBASIC0.93□□□□□ -2.26
SDC1P18827 Y_RNA.338-201ENST00000365320 114 ntBASIC0.93□□□□□ -2.26
SDC1P18827 RNU6-53P-201ENST00000365367 106 ntBASIC0.93□□□□□ -2.26
SDC1P18827 Y_RNA.431-201ENST00000384086 102 ntBASIC0.93□□□□□ -2.26
SDC1P18827 MIR516B2-201ENST00000385190 85 ntBASIC0.93□□□□□ -2.26
SDC1P18827 RNU6ATAC15P-201ENST00000408279 121 ntBASIC0.93□□□□□ -2.26
SDC1P18827 PMCHL1-202ENST00000423102 261 ntBASIC0.93□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 167.9 ms