Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC-0.15□□□□□ -2.43
LIMS3P0CW19 RNU7-87P-201ENST00000459343 62 ntBASIC-0.15□□□□□ -2.43
LIMS3P0CW19 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC-0.15□□□□□ -2.43
LIMS3P0CW19 RNU2-12P-201ENST00000517216 168 ntBASIC-0.15□□□□□ -2.43
LIMS3P0CW19 MIR5701-3-201ENST00000578890 82 ntBASIC-0.15□□□□□ -2.43
LIMS3P0CW19 MIR5701-1-201ENST00000585138 82 ntBASIC-0.15□□□□□ -2.43
LIMS3P0CW19 AC020891.4-201ENST00000605745 93 ntBASIC-0.15□□□□□ -2.43
LIMS3P0CW19 MIR5701-2-201ENST00000615634 82 ntBASIC-0.15□□□□□ -2.43
LIMS3P0CW19 Pinc.1-201ENST00000616452 154 ntBASIC-0.15□□□□□ -2.43
LIMS3P0CW19 uc_338.4-201ENST00000616635 176 ntBASIC-0.15□□□□□ -2.43
LIMS3P0CW19 SNORA72-201ENST00000384339 132 ntBASIC-0.16□□□□□ -2.44
LIMS3P0CW19 RNY1P14-201ENST00000384426 108 ntBASIC-0.16□□□□□ -2.44
LIMS3P0CW19 RNU6-700P-201ENST00000391043 107 ntBASIC-0.16□□□□□ -2.44
LIMS3P0CW19 U8.17-201ENST00000391292 132 ntBASIC-0.16□□□□□ -2.44
LIMS3P0CW19 SNORA75.6-201ENST00000391318 127 ntBASIC-0.16□□□□□ -2.44
LIMS3P0CW19 MTCO3P40-201ENST00000392516 676 ntBASIC-0.16□□□□□ -2.44
LIMS3P0CW19 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC-0.16□□□□□ -2.44
LIMS3P0CW19 SEPT7P4-201ENST00000437076 306 ntBASIC-0.16□□□□□ -2.44
LIMS3P0CW19 AL512360.1-201ENST00000555346 234 ntBASIC-0.16□□□□□ -2.44
LIMS3P0CW19 AC090897.1-201ENST00000580909 226 ntBASIC-0.16□□□□□ -2.44
LIMS3P0CW19 MIR4290-201ENST00000583807 95 ntBASIC-0.16□□□□□ -2.44
LIMS3P0CW19 AL162413.1-201ENST00000603198 110 ntBASIC-0.16□□□□□ -2.44
LIMS3P0CW19 AC022709.1-201ENST00000615967 87 ntBASIC-0.16□□□□□ -2.44
LIMS3P0CW19 MTND1P7-201ENST00000632801 297 ntBASIC-0.16□□□□□ -2.44
LIMS3P0CW19 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC-0.17□□□□□ -2.44
LIMS3P0CW19 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC-0.17□□□□□ -2.44
LIMS3P0CW19 snoU13.18-201ENST00000459483 104 ntBASIC-0.17□□□□□ -2.44
LIMS3P0CW19 SCARNA8-201ENST00000515924 131 ntBASIC-0.17□□□□□ -2.44
LIMS3P0CW19 AC145350.1-201ENST00000567426 208 ntBASIC-0.17□□□□□ -2.44
LIMS3P0CW19 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC-0.17□□□□□ -2.44
LIMS3P0CW19 AC006380.1-201ENST00000603598 186 ntBASIC-0.17□□□□□ -2.44
LIMS3P0CW19 AC005972.2-201ENST00000604690 348 ntBASIC-0.17□□□□□ -2.44
LIMS3P0CW19 AC104408.1-201ENST00000605241 170 ntBASIC-0.17□□□□□ -2.44
LIMS3P0CW19 Y_RNA.48-201ENST00000362710 103 ntBASIC-0.18□□□□□ -2.44
LIMS3P0CW19 Y_RNA.256-201ENST00000364594 104 ntBASIC-0.18□□□□□ -2.44
LIMS3P0CW19 Y_RNA.354-201ENST00000365448 111 ntBASIC-0.18□□□□□ -2.44
LIMS3P0CW19 RNU6-442P-201ENST00000383968 104 ntBASIC-0.18□□□□□ -2.44
LIMS3P0CW19 MIR598-201ENST00000384868 97 ntBASIC-0.18□□□□□ -2.44
LIMS3P0CW19 AL031003.1-201ENST00000404229 172 ntBASIC-0.18□□□□□ -2.44
LIMS3P0CW19 RNU2-59P-201ENST00000410482 191 ntBASIC-0.18□□□□□ -2.44
LIMS3P0CW19 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC-0.18□□□□□ -2.44
LIMS3P0CW19 HMGN1P10-201ENST00000474557 553 ntBASIC-0.18□□□□□ -2.44
LIMS3P0CW19 RNU6-1281P-201ENST00000516223 105 ntBASIC-0.18□□□□□ -2.44
LIMS3P0CW19 RNU1-54P-201ENST00000517181 120 ntBASIC-0.18□□□□□ -2.44
LIMS3P0CW19 AC087685.1-201ENST00000587507 141 ntBASIC-0.18□□□□□ -2.44
LIMS3P0CW19 MIR4791-201ENST00000607666 84 ntBASIC-0.18□□□□□ -2.44
LIMS3P0CW19 NEAT1_2.1-201ENST00000620525 105 ntBASIC-0.18□□□□□ -2.44
LIMS3P0CW19 AL359880.1-201ENST00000621879 266 ntBASIC-0.18□□□□□ -2.44
LIMS3P0CW19 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC-0.18□□□□□ -2.44
LIMS3P0CW19 SNORA9.1-201ENST00000362412 131 ntBASIC-0.19□□□□□ -2.44
LIMS3P0CW19 RNU6-1059P-201ENST00000363752 98 ntBASIC-0.19□□□□□ -2.44
LIMS3P0CW19 SNORA1.2-201ENST00000365189 134 ntBASIC-0.19□□□□□ -2.44
LIMS3P0CW19 RNU6-318P-201ENST00000384283 103 ntBASIC-0.19□□□□□ -2.44
LIMS3P0CW19 RNU6-125P-201ENST00000384505 107 ntBASIC-0.19□□□□□ -2.44
LIMS3P0CW19 Y_RNA.553-201ENST00000384670 102 ntBASIC-0.19□□□□□ -2.44
LIMS3P0CW19 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC-0.19□□□□□ -2.44
LIMS3P0CW19 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC-0.19□□□□□ -2.44
LIMS3P0CW19 MTCO2P27-201ENST00000420740 428 ntBASIC-0.19□□□□□ -2.44
LIMS3P0CW19 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC-0.19□□□□□ -2.44
LIMS3P0CW19 USP9YP30-201ENST00000430729 455 ntBASIC-0.19□□□□□ -2.44
LIMS3P0CW19 AC092989.1-201ENST00000481235 277 ntBASIC-0.19□□□□□ -2.44
LIMS3P0CW19 AC105029.1-201ENST00000520250 669 ntBASIC-0.19□□□□□ -2.44
LIMS3P0CW19 NBR2-204ENST00000587322 63 ntBASIC-0.19□□□□□ -2.44
LIMS3P0CW19 AC121247.2-201ENST00000604776 136 ntBASIC-0.19□□□□□ -2.44
LIMS3P0CW19 SNORA63C-201ENST00000364578 129 ntBASIC-0.2□□□□□ -2.44
LIMS3P0CW19 RNU6-842P-201ENST00000384269 107 ntBASIC-0.2□□□□□ -2.44
LIMS3P0CW19 RNU6-364P-201ENST00000384387 107 ntBASIC-0.2□□□□□ -2.44
LIMS3P0CW19 Y_RNA.567-201ENST00000384736 106 ntBASIC-0.2□□□□□ -2.44
LIMS3P0CW19 RNU2-61P-201ENST00000411069 191 ntBASIC-0.2□□□□□ -2.44
LIMS3P0CW19 RNU7-62P-201ENST00000458856 62 ntBASIC-0.2□□□□□ -2.44
LIMS3P0CW19 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC-0.2□□□□□ -2.44
LIMS3P0CW19 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC-0.2□□□□□ -2.44
LIMS3P0CW19 MIR3678-201ENST00000578455 94 ntBASIC-0.2□□□□□ -2.44
LIMS3P0CW19 MIR3124-201ENST00000582636 67 ntBASIC-0.2□□□□□ -2.44
LIMS3P0CW19 AC119751.7-201ENST00000600494 245 ntBASIC-0.2□□□□□ -2.44
LIMS3P0CW19 AC004467.1-201ENST00000615678 330 ntBASIC-0.2□□□□□ -2.44
LIMS3P0CW19 AC124864.2-201ENST00000624736 186 ntBASIC-0.2□□□□□ -2.44
LIMS3P0CW19 MTND5P26-201ENST00000426018 1752 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 RNA5SP117-201ENST00000365294 118 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 Y_RNA.359-201ENST00000365498 102 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 RNU6-1042P-201ENST00000384204 107 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 MIR802-201ENST00000390235 94 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 RNU6-1319P-201ENST00000390855 104 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 RNU6-747P-201ENST00000390928 104 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 RNU6-241P-201ENST00000391148 104 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 RNU6-447P-201ENST00000410293 104 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 RNU6-1118P-201ENST00000410382 104 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 RNU6-1076P-201ENST00000410397 104 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 RNU6-355P-201ENST00000410427 104 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 RNU6-791P-201ENST00000410467 104 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 RNU6-705P-201ENST00000410601 104 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 RNU6-1100P-201ENST00000410691 104 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 RNU6-860P-201ENST00000410860 104 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 RNU6-847P-201ENST00000411115 108 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 RNU6-1217P-201ENST00000411276 104 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 RNU6-785P-201ENST00000411324 104 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 CEP57L1P1-201ENST00000430943 1201 ntBASIC-0.21□□□□□ -2.44
LIMS3P0CW19 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC-0.21□□□□□ -2.44
LIMS3P0CW19 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC-0.21□□□□□ -2.44
LIMS3P0CW19 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC-0.21□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 251.1 ms