| MT1A | P04731 | MTCO3P8-201 | ENST00000453691 | 755 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| MT1A | P04731 | snoU13.6-201 | ENST00000458785 | 104 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNU7-136P-201 | ENST00000458819 | 69 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC097501.2-201 | ENST00000502668 | 305 nt | TSL 5 BASIC | -1.08 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC120042.2-201 | ENST00000521556 | 667 nt | TSL 2 BASIC | -1.08 | □□□□□ -2.58 | | |
| MT1A | P04731 | NDUFV2-AS1-202 | ENST00000583081 | 399 nt | TSL 5 BASIC | -1.08 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC087683.1-201 | ENST00000591187 | 441 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| MT1A | P04731 | BNIP3P39-201 | ENST00000601077 | 554 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| MT1A | P04731 | MIR4791-201 | ENST00000607666 | 84 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC012467.1-201 | ENST00000607740 | 256 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC010975.3-201 | ENST00000618727 | 978 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC023510.2-201 | ENST00000622162 | 746 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC008873.1-201 | ENST00000625051 | 138 nt | BASIC | -1.08 | □□□□□ -2.58 | | |
| MT1A | P04731 | Y_RNA.117-201 | ENST00000363294 | 101 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| MT1A | P04731 | SNORA72.6-201 | ENST00000384520 | 129 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| MT1A | P04731 | Y_RNA.539-201 | ENST00000384635 | 107 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| MT1A | P04731 | DEFB110-202 | ENST00000393660 | 189 nt | APPRIS ALT2 TSL 1 (best) BASIC | -1.09 | □□□□□ -2.58 | | |
| MT1A | P04731 | MIR548H1-201 | ENST00000408610 | 102 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC016907.1-201 | ENST00000419483 | 435 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| MT1A | P04731 | C5orf58-201 | ENST00000421269 | 406 nt | APPRIS ALT2 TSL 2 BASIC | -1.09 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC002542.1-201 | ENST00000440683 | 193 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNU7-182P-201 | ENST00000459009 | 62 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC008243.1-201 | ENST00000504955 | 389 nt | TSL 3 BASIC | -1.09 | □□□□□ -2.58 | | |
| MT1A | P04731 | SERF1AP1-201 | ENST00000514575 | 187 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNU6-287P-201 | ENST00000516230 | 98 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| MT1A | P04731 | Y_RNA.689-201 | ENST00000516589 | 107 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNU6-1178P-201 | ENST00000516674 | 107 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| MT1A | P04731 | RNU6-1261P-201 | ENST00000517194 | 104 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC100767.1-201 | ENST00000528178 | 123 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| MT1A | P04731 | AP003733.2-201 | ENST00000529409 | 171 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| MT1A | P04731 | LINC02095-202 | ENST00000543512 | 323 nt | TSL 3 BASIC | -1.09 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC005776.1-201 | ENST00000603164 | 290 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC011373.1-201 | ENST00000607270 | 237 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| MT1A | P04731 | AC068880.4-201 | ENST00000623082 | 495 nt | BASIC | -1.09 | □□□□□ -2.58 | | |
| MT1A | P04731 | MIR335-201 | ENST00000362173 | 94 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | MIR30D-201 | ENST00000362283 | 70 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | RNU6-509P-201 | ENST00000363519 | 107 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | SNORD115-28-201 | ENST00000363931 | 81 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | Y_RNA.190-201 | ENST00000363964 | 101 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | Y_RNA.223-201 | ENST00000364290 | 113 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | RNU6-744P-201 | ENST00000365557 | 107 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | RNU6-1316P-201 | ENST00000384242 | 108 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | MIR578-201 | ENST00000384828 | 96 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | MIR124-2-201 | ENST00000385081 | 109 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | RNU6-576P-201 | ENST00000390854 | 102 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | OPRPN-201 | ENST00000399575 | 1040 nt | APPRIS P1 TSL 1 (best) BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | MTCO3P19-201 | ENST00000415864 | 321 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | AL121872.1-201 | ENST00000420327 | 281 nt | TSL 5 BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | AL512286.1-201 | ENST00000439244 | 400 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | AL137001.1-201 | ENST00000450212 | 199 nt | TSL 3 BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | SNORD18.2-201 | ENST00000459604 | 70 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | RNU6-377P-201 | ENST00000515965 | 102 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | RNU6-765P-201 | ENST00000516916 | 99 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | CCDC7-207 | ENST00000535327 | 700 nt | APPRIS ALT2 TSL 1 (best) BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | AC130371.1-204 | ENST00000576197 | 401 nt | TSL 3 BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | YWHAEP3-201 | ENST00000582767 | 121 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | AL353803.5-201 | ENST00000599815 | 141 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | AL356055.1-201 | ENST00000602528 | 446 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | AP000907.4-201 | ENST00000604143 | 237 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | MIR6502-201 | ENST00000617296 | 76 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | HOXA11-AS1_4.1-201 | ENST00000620901 | 233 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | uc_338.10-201 | ENST00000621872 | 182 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | AC099654.8-201 | ENST00000637757 | 681 nt | BASIC | -1.1 | □□□□□ -2.59 | | |
| MT1A | P04731 | RNU6-1084P-201 | ENST00000362498 | 107 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | Y_RNA.38-201 | ENST00000362617 | 102 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | RNU6-216P-201 | ENST00000363282 | 104 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | SNORA63.5-201 | ENST00000363548 | 123 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | Y_RNA.151-201 | ENST00000363566 | 112 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | RNA5SP245-201 | ENST00000364239 | 121 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | RNY4P7-201 | ENST00000364600 | 96 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | RNU6-865P-201 | ENST00000364772 | 107 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | SNORD74.6-201 | ENST00000364796 | 70 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | RNU6-336P-201 | ENST00000364891 | 107 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | Y_RNA.377-201 | ENST00000365644 | 108 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | SNORD24-201 | ENST00000383884 | 75 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | SNORA24-201 | ENST00000384096 | 131 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | RNU6-891P-201 | ENST00000384280 | 111 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | Y_RNA.494-201 | ENST00000384432 | 111 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | TRDJ1-201 | ENST00000390473 | 51 nt | APPRIS P1 BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | RNA5SP86-201 | ENST00000390869 | 98 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | RNU6-278P-201 | ENST00000390945 | 109 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | AL606845.1-201 | ENST00000404881 | 255 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | RNU6-564P-201 | ENST00000410983 | 104 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | MTND3P8-201 | ENST00000412909 | 339 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | CEP57L1P1-201 | ENST00000430943 | 1201 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | MTCO3P17-201 | ENST00000443775 | 513 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | RNU7-134P-201 | ENST00000458997 | 64 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | snoU13.2-201 | ENST00000459201 | 104 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | Y_RNA.637-201 | ENST00000459424 | 114 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | RNU7-55P-201 | ENST00000459426 | 62 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | AC104563.1-201 | ENST00000476147 | 376 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | RPS29P24-201 | ENST00000486345 | 171 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | AC008628.2-201 | ENST00000502605 | 298 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | AC055733.2-201 | ENST00000504737 | 340 nt | TSL 2 BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | RNU6-1194P-201 | ENST00000516208 | 104 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | RNU6-759P-201 | ENST00000516740 | 103 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | RNU6-430P-201 | ENST00000517078 | 107 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | RNU7-161P-201 | ENST00000517289 | 62 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | DEFB108A-201 | ENST00000530110 | 222 nt | BASIC | -1.11 | □□□□□ -2.59 | | |
| MT1A | P04731 | EIF1AXP2-201 | ENST00000555940 | 413 nt | BASIC | -1.11 | □□□□□ -2.59 | | |