Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 RN7SKP164-201ENST00000516138 266 ntBASIC0.4□□□□□ -2.34
NPHP4O75161 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.4□□□□□ -2.34
NPHP4O75161 MIR5701-3-201ENST00000578890 82 ntBASIC0.4□□□□□ -2.34
NPHP4O75161 MIR4764-201ENST00000580680 88 ntBASIC0.4□□□□□ -2.34
NPHP4O75161 MIR5701-1-201ENST00000585138 82 ntBASIC0.4□□□□□ -2.34
NPHP4O75161 MIR5701-2-201ENST00000615634 82 ntBASIC0.4□□□□□ -2.34
NPHP4O75161 RNA5SP95-201ENST00000410319 137 ntBASIC0.39□□□□□ -2.35
NPHP4O75161 RNA5SP222-201ENST00000411039 105 ntBASIC0.39□□□□□ -2.35
NPHP4O75161 AC244098.3-201ENST00000424803 96 ntBASIC0.39□□□□□ -2.35
NPHP4O75161 MTND1P17-201ENST00000448961 204 ntBASIC0.39□□□□□ -2.35
NPHP4O75161 SNORD5.1-201ENST00000458800 75 ntBASIC0.39□□□□□ -2.35
NPHP4O75161 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.39□□□□□ -2.35
NPHP4O75161 RNU6-1337P-201ENST00000516525 95 ntBASIC0.39□□□□□ -2.35
NPHP4O75161 RNU6-506P-201ENST00000516553 94 ntBASIC0.39□□□□□ -2.35
NPHP4O75161 MIR3662-201ENST00000637030 95 ntBASIC0.39□□□□□ -2.35
NPHP4O75161 AC134026.1-201ENST00000623249 2239 ntBASIC0.39□□□□□ -2.35
NPHP4O75161 Y_RNA.2-201ENST00000362330 96 ntBASIC0.38□□□□□ -2.35
NPHP4O75161 Y_RNA.243-201ENST00000364481 109 ntBASIC0.38□□□□□ -2.35
NPHP4O75161 RNU4-75P-201ENST00000364621 146 ntBASIC0.38□□□□□ -2.35
NPHP4O75161 SNORA36.2-201ENST00000384004 127 ntBASIC0.38□□□□□ -2.35
NPHP4O75161 MIR136-201ENST00000385207 82 ntBASIC0.38□□□□□ -2.35
NPHP4O75161 RNU1-119P-201ENST00000391122 165 ntBASIC0.38□□□□□ -2.35
NPHP4O75161 RNU6-994P-201ENST00000410507 111 ntBASIC0.38□□□□□ -2.35
NPHP4O75161 RNU6-1304P-201ENST00000411374 106 ntBASIC0.38□□□□□ -2.35
NPHP4O75161 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.38□□□□□ -2.35
NPHP4O75161 SNORA25.10-201ENST00000515926 124 ntBASIC0.38□□□□□ -2.35
NPHP4O75161 AC245505.1-201ENST00000556398 224 ntBASIC0.38□□□□□ -2.35
NPHP4O75161 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC0.38□□□□□ -2.35
NPHP4O75161 MIR4802-201ENST00000581881 80 ntBASIC0.38□□□□□ -2.35
NPHP4O75161 AC025627.3-201ENST00000582078 182 ntBASIC0.38□□□□□ -2.35
NPHP4O75161 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC0.38□□□□□ -2.35
NPHP4O75161 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.38□□□□□ -2.35
NPHP4O75161 MIR410-201ENST00000362222 80 ntBASIC0.38□□□□□ -2.35
NPHP4O75161 Y_RNA.301-201ENST00000364990 103 ntBASIC0.38□□□□□ -2.35
NPHP4O75161 SNORD14.1-201ENST00000365609 90 ntBASIC0.38□□□□□ -2.35
NPHP4O75161 Y_RNA.517-201ENST00000384551 106 ntBASIC0.38□□□□□ -2.35
NPHP4O75161 RNU6-700P-201ENST00000391043 107 ntBASIC0.38□□□□□ -2.35
NPHP4O75161 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.38□□□□□ -2.35
NPHP4O75161 MTCYBP10-201ENST00000424905 650 ntBASIC0.38□□□□□ -2.35
NPHP4O75161 Y_RNA.682-201ENST00000516457 100 ntBASIC0.38□□□□□ -2.35
NPHP4O75161 RNU6-1110P-201ENST00000516462 101 ntBASIC0.38□□□□□ -2.35
NPHP4O75161 AF235103.2-201ENST00000525753 346 ntBASIC0.38□□□□□ -2.35
NPHP4O75161 MIR4790-201ENST00000577799 79 ntBASIC0.38□□□□□ -2.35
NPHP4O75161 AC012433.1-201ENST00000588916 398 ntBASIC0.38□□□□□ -2.35
NPHP4O75161 RNU6-1084P-201ENST00000362498 107 ntBASIC0.37□□□□□ -2.35
NPHP4O75161 SNORD18A-201ENST00000363753 72 ntBASIC0.37□□□□□ -2.35
NPHP4O75161 Y_RNA.172-201ENST00000363765 102 ntBASIC0.37□□□□□ -2.35
NPHP4O75161 Y_RNA.554-201ENST00000384672 102 ntBASIC0.37□□□□□ -2.35
NPHP4O75161 Y_RNA.559-201ENST00000384686 107 ntBASIC0.37□□□□□ -2.35
NPHP4O75161 RNU6-1237P-201ENST00000384777 107 ntBASIC0.37□□□□□ -2.35
NPHP4O75161 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC0.37□□□□□ -2.35
NPHP4O75161 MTND1P29-201ENST00000448112 647 ntBASIC0.37□□□□□ -2.35
NPHP4O75161 AC026782.1-201ENST00000512952 449 ntBASIC0.37□□□□□ -2.35
NPHP4O75161 AC105029.1-201ENST00000520250 669 ntBASIC0.37□□□□□ -2.35
NPHP4O75161 AC109635.3-201ENST00000529536 185 ntBASIC0.37□□□□□ -2.35
NPHP4O75161 AC018659.1-201ENST00000551083 169 ntBASIC0.37□□□□□ -2.35
NPHP4O75161 AC055872.1-201ENST00000570978 278 ntBASIC0.37□□□□□ -2.35
NPHP4O75161 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.36□□□□□ -2.35
NPHP4O75161 Y_RNA.402-201ENST00000383972 102 ntBASIC0.36□□□□□ -2.35
NPHP4O75161 MIR1302-7-201ENST00000408841 72 ntBASIC0.36□□□□□ -2.35
NPHP4O75161 RNA5SP25-201ENST00000410815 110 ntBASIC0.36□□□□□ -2.35
NPHP4O75161 RNU6-373P-201ENST00000411247 98 ntBASIC0.36□□□□□ -2.35
NPHP4O75161 AC093534.1-201ENST00000504977 132 ntBASIC0.36□□□□□ -2.35
NPHP4O75161 RNU6-408P-201ENST00000515910 100 ntBASIC0.36□□□□□ -2.35
NPHP4O75161 SNORD45.4-201ENST00000516629 73 ntBASIC0.36□□□□□ -2.35
NPHP4O75161 MIR4300-201ENST00000581016 96 ntBASIC0.36□□□□□ -2.35
NPHP4O75161 AC018462.2-201ENST00000605375 395 ntBASIC0.36□□□□□ -2.35
NPHP4O75161 AC004467.1-201ENST00000615678 330 ntBASIC0.36□□□□□ -2.35
NPHP4O75161 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.36□□□□□ -2.35
NPHP4O75161 MIR6516-201ENST00000630554 81 ntBASIC0.36□□□□□ -2.35
NPHP4O75161 U8.5-201ENST00000364528 136 ntBASIC0.35□□□□□ -2.35
NPHP4O75161 Y_RNA.253-201ENST00000364562 112 ntBASIC0.35□□□□□ -2.35
NPHP4O75161 AC117470.1-201ENST00000381974 330 ntBASIC0.35□□□□□ -2.35
NPHP4O75161 RNU6-1013P-201ENST00000384180 107 ntBASIC0.35□□□□□ -2.35
NPHP4O75161 Y_RNA.476-201ENST00000384347 108 ntBASIC0.35□□□□□ -2.35
NPHP4O75161 MIR522-201ENST00000385071 87 ntBASIC0.35□□□□□ -2.35
NPHP4O75161 Y_RNA.594-201ENST00000410373 140 ntBASIC0.35□□□□□ -2.35
NPHP4O75161 SNORD12B-201ENST00000410433 91 ntBASIC0.35□□□□□ -2.35
NPHP4O75161 MTCO2P12-201ENST00000427426 682 ntBASIC0.35□□□□□ -2.35
NPHP4O75161 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.35□□□□□ -2.35
NPHP4O75161 AC067940.1-201ENST00000458411 300 ntBASIC0.35□□□□□ -2.35
NPHP4O75161 SNORD123-201ENST00000459473 70 ntBASIC0.35□□□□□ -2.35
NPHP4O75161 RNU4-49P-201ENST00000516080 140 ntBASIC0.35□□□□□ -2.35
NPHP4O75161 MTND2P38-201ENST00000522536 667 ntBASIC0.35□□□□□ -2.35
NPHP4O75161 MIR4762-201ENST00000585261 75 ntBASIC0.35□□□□□ -2.35
NPHP4O75161 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.35□□□□□ -2.35
NPHP4O75161 RNU6-961P-201ENST00000363893 105 ntBASIC0.34□□□□□ -2.36
NPHP4O75161 SNORD115-30-201ENST00000364117 82 ntBASIC0.34□□□□□ -2.36
NPHP4O75161 SNORD50B-201ENST00000364995 70 ntBASIC0.34□□□□□ -2.36
NPHP4O75161 SNORA2B-201ENST00000384583 137 ntBASIC0.34□□□□□ -2.36
NPHP4O75161 RNU6-1067P-201ENST00000384752 107 ntBASIC0.34□□□□□ -2.36
NPHP4O75161 SNORD111-201ENST00000408139 94 ntBASIC0.34□□□□□ -2.36
NPHP4O75161 SNRPGP10-201ENST00000432323 225 ntBASIC0.34□□□□□ -2.36
NPHP4O75161 UBE2V1P7-201ENST00000446395 340 ntBASIC0.34□□□□□ -2.36
NPHP4O75161 MTND5P5-201ENST00000503764 376 ntBASIC0.34□□□□□ -2.36
NPHP4O75161 AC093027.1-201ENST00000546698 429 ntBASIC0.34□□□□□ -2.36
NPHP4O75161 AC018638.8-201ENST00000588755 281 ntBASIC0.34□□□□□ -2.36
NPHP4O75161 MIR1244-1-201ENST00000612829 85 ntBASIC0.34□□□□□ -2.36
NPHP4O75161 MIR1244-3-201ENST00000635744 85 ntBASIC0.34□□□□□ -2.36
NPHP4O75161 MIR1244-2-201ENST00000636449 85 ntBASIC0.34□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms