Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 RN7SKP164-201ENST00000516138 266 ntBASIC1.91□□□□□ -2.1
LDB3O75112 RNU6-426P-201ENST00000516464 97 ntBASIC1.91□□□□□ -2.1
LDB3O75112 AC109810.1-201ENST00000534066 224 ntBASIC1.91□□□□□ -2.1
LDB3O75112 AC015720.1-201ENST00000565251 277 ntBASIC1.91□□□□□ -2.1
LDB3O75112 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.91□□□□□ -2.1
LDB3O75112 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
LDB3O75112 AL159152.1-201ENST00000635019 2587 ntBASIC1.91□□□□□ -2.1
LDB3O75112 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC1.9□□□□□ -2.1
LDB3O75112 RNA5SP493-201ENST00000364115 91 ntBASIC1.9□□□□□ -2.11
LDB3O75112 RNU6-151P-201ENST00000364158 107 ntBASIC1.9□□□□□ -2.11
LDB3O75112 RNA5SP37-201ENST00000365420 130 ntBASIC1.9□□□□□ -2.11
LDB3O75112 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.9□□□□□ -2.11
LDB3O75112 MIR526A2-201ENST00000390198 65 ntBASIC1.9□□□□□ -2.11
LDB3O75112 RNA5SP465-201ENST00000391195 109 ntBASIC1.9□□□□□ -2.11
LDB3O75112 RNA5SP450-201ENST00000411206 102 ntBASIC1.9□□□□□ -2.11
LDB3O75112 CYCSP49-201ENST00000420810 319 ntBASIC1.9□□□□□ -2.11
LDB3O75112 AC060773.1-201ENST00000421698 310 ntBASIC1.9□□□□□ -2.11
LDB3O75112 AL445646.1-201ENST00000431784 216 ntBASIC1.9□□□□□ -2.11
LDB3O75112 HSPE1P13-201ENST00000451143 297 ntBASIC1.9□□□□□ -2.11
LDB3O75112 RN7SL429P-201ENST00000479090 223 ntBASIC1.9□□□□□ -2.11
LDB3O75112 RN7SL489P-201ENST00000486185 223 ntBASIC1.9□□□□□ -2.11
LDB3O75112 RN7SL327P-201ENST00000488659 223 ntBASIC1.9□□□□□ -2.11
LDB3O75112 SNORA70.12-201ENST00000516084 153 ntBASIC1.9□□□□□ -2.11
LDB3O75112 RNU6-1146P-201ENST00000516282 102 ntBASIC1.9□□□□□ -2.11
LDB3O75112 IGLV3-17-201ENST00000519099 244 ntBASIC1.9□□□□□ -2.11
LDB3O75112 AC002984.1-201ENST00000591692 448 ntBASIC1.9□□□□□ -2.11
LDB3O75112 AP003357.1-201ENST00000604497 148 ntBASIC1.9□□□□□ -2.11
LDB3O75112 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.9□□□□□ -2.11
LDB3O75112 U2.20-201ENST00000613956 192 ntBASIC1.9□□□□□ -2.11
LDB3O75112 RN7SL853P-201ENST00000617250 223 ntBASIC1.9□□□□□ -2.11
LDB3O75112 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
LDB3O75112 ZNF702P-202ENST00000434269 1966 ntBASIC1.9□□□□□ -2.11
LDB3O75112 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
LDB3O75112 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
LDB3O75112 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
LDB3O75112 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
LDB3O75112 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.89□□□□□ -2.11
LDB3O75112 AL596028.1-201ENST00000326971 197 ntBASIC1.89□□□□□ -2.11
LDB3O75112 RNU1-58P-201ENST00000362413 163 ntBASIC1.89□□□□□ -2.11
LDB3O75112 Y_RNA.215-201ENST00000364204 112 ntBASIC1.89□□□□□ -2.11
LDB3O75112 RNU6-449P-201ENST00000383914 107 ntBASIC1.89□□□□□ -2.11
LDB3O75112 Y_RNA.400-201ENST00000383963 111 ntBASIC1.89□□□□□ -2.11
LDB3O75112 MIR17-201ENST00000385012 84 ntBASIC1.89□□□□□ -2.11
LDB3O75112 MIR569-201ENST00000385228 96 ntBASIC1.89□□□□□ -2.11
LDB3O75112 MIR616-201ENST00000385293 97 ntBASIC1.89□□□□□ -2.11
LDB3O75112 AL606845.1-201ENST00000404881 255 ntBASIC1.89□□□□□ -2.11
LDB3O75112 MIR1283-2-201ENST00000408621 87 ntBASIC1.89□□□□□ -2.11
LDB3O75112 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
LDB3O75112 AL353689.1-201ENST00000438895 199 ntBASIC1.89□□□□□ -2.11
LDB3O75112 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.89□□□□□ -2.11
LDB3O75112 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.89□□□□□ -2.11
LDB3O75112 AC025033.1-201ENST00000463883 194 ntBASIC1.89□□□□□ -2.11
LDB3O75112 AC090255.1-201ENST00000495779 349 ntBASIC1.89□□□□□ -2.11
LDB3O75112 RNU7-121P-201ENST00000516604 62 ntBASIC1.89□□□□□ -2.11
LDB3O75112 AC127455.1-201ENST00000565496 145 ntBASIC1.89□□□□□ -2.11
LDB3O75112 POLR3GP1-201ENST00000594073 261 ntBASIC1.89□□□□□ -2.11
LDB3O75112 AL929325.1-201ENST00000603096 117 ntBASIC1.89□□□□□ -2.11
LDB3O75112 SNRPGP19-201ENST00000603826 189 ntBASIC1.89□□□□□ -2.11
LDB3O75112 AC006435.5-201ENST00000624486 112 ntBASIC1.89□□□□□ -2.11
LDB3O75112 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
LDB3O75112 SNORD114-7-201ENST00000362520 77 ntBASIC1.88□□□□□ -2.11
LDB3O75112 RNU6-23P-201ENST00000363283 107 ntBASIC1.88□□□□□ -2.11
LDB3O75112 SNORA33-201ENST00000363664 130 ntBASIC1.88□□□□□ -2.11
LDB3O75112 SNORD50.2-201ENST00000365465 70 ntBASIC1.88□□□□□ -2.11
LDB3O75112 SNORA20-201ENST00000384662 132 ntBASIC1.88□□□□□ -2.11
LDB3O75112 Y_RNA.568-201ENST00000384742 113 ntBASIC1.88□□□□□ -2.11
LDB3O75112 RNU6-239P-201ENST00000390990 99 ntBASIC1.88□□□□□ -2.11
LDB3O75112 MIR1253-201ENST00000408273 105 ntBASIC1.88□□□□□ -2.11
LDB3O75112 MIR548I2-201ENST00000408348 149 ntBASIC1.88□□□□□ -2.11
LDB3O75112 BX510359.4-201ENST00000423750 193 ntBASIC1.88□□□□□ -2.11
LDB3O75112 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.88□□□□□ -2.11
LDB3O75112 AC011406.1-201ENST00000512440 370 ntBASIC1.88□□□□□ -2.11
LDB3O75112 RNU1-40P-201ENST00000516816 164 ntBASIC1.88□□□□□ -2.11
LDB3O75112 RNU1-97P-201ENST00000516872 164 ntBASIC1.88□□□□□ -2.11
LDB3O75112 MIR3169-201ENST00000578032 83 ntBASIC1.88□□□□□ -2.11
LDB3O75112 MIR4724-201ENST00000579485 89 ntBASIC1.88□□□□□ -2.11
LDB3O75112 MIR4431-201ENST00000579990 94 ntBASIC1.88□□□□□ -2.11
LDB3O75112 MIR5694-201ENST00000581190 76 ntBASIC1.88□□□□□ -2.11
LDB3O75112 MIR3945-201ENST00000581853 98 ntBASIC1.88□□□□□ -2.11
LDB3O75112 AC005972.2-201ENST00000604690 348 ntBASIC1.88□□□□□ -2.11
LDB3O75112 Y_RNA.778-201ENST00000620203 90 ntBASIC1.88□□□□□ -2.11
LDB3O75112 AC008555.8-201ENST00000623602 2168 ntBASIC1.88□□□□□ -2.11
LDB3O75112 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC1.87□□□□□ -2.11
LDB3O75112 RNU1-22P-201ENST00000363334 158 ntBASIC1.87□□□□□ -2.11
LDB3O75112 RNU4-11P-201ENST00000365287 132 ntBASIC1.87□□□□□ -2.11
LDB3O75112 RNU6-81P-201ENST00000365608 104 ntBASIC1.87□□□□□ -2.11
LDB3O75112 RNU6-1323P-201ENST00000384025 107 ntBASIC1.87□□□□□ -2.11
LDB3O75112 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.87□□□□□ -2.11
LDB3O75112 Y_RNA.622-201ENST00000411091 108 ntBASIC1.87□□□□□ -2.11
LDB3O75112 AC006461.1-201ENST00000412637 326 ntBASIC1.87□□□□□ -2.11
LDB3O75112 EBAG9P1-201ENST00000418955 543 ntBASIC1.87□□□□□ -2.11
LDB3O75112 AL162725.1-201ENST00000435405 301 ntBASIC1.87□□□□□ -2.11
LDB3O75112 RPS4XP11-201ENST00000446897 772 ntBASIC1.87□□□□□ -2.11
LDB3O75112 ATP5J2P3-201ENST00000451550 258 ntBASIC1.87□□□□□ -2.11
LDB3O75112 RPS27P22-201ENST00000478056 241 ntBASIC1.87□□□□□ -2.11
LDB3O75112 AC100821.1-201ENST00000523153 2479 ntBASIC1.87□□□□□ -2.11
LDB3O75112 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.87□□□□□ -2.11
LDB3O75112 AC121758.2-201ENST00000553271 193 ntBASIC1.87□□□□□ -2.11
LDB3O75112 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.87□□□□□ -2.11
LDB3O75112 MIR5089-201ENST00000580047 84 ntBASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms