Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 U6.108-201ENST00000637764 58 ntBASIC2.18□□□□□ -2.06
FOXN3O00409 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.18□□□□□ -2.06
FOXN3O00409 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.18□□□□□ -2.06
FOXN3O00409 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
FOXN3O00409 RNU6-653P-201ENST00000363074 106 ntBASIC2.17□□□□□ -2.06
FOXN3O00409 RNU6-112P-201ENST00000363599 104 ntBASIC2.17□□□□□ -2.06
FOXN3O00409 Y_RNA.262-201ENST00000364641 102 ntBASIC2.17□□□□□ -2.06
FOXN3O00409 Y_RNA.267-201ENST00000364679 109 ntBASIC2.17□□□□□ -2.06
FOXN3O00409 Y_RNA.293-201ENST00000364908 93 ntBASIC2.17□□□□□ -2.06
FOXN3O00409 Y_RNA.572-201ENST00000384757 98 ntBASIC2.17□□□□□ -2.06
FOXN3O00409 RNU2-2P-201ENST00000410396 191 ntBASIC2.17□□□□□ -2.06
FOXN3O00409 RNA5SP511-201ENST00000410487 115 ntBASIC2.17□□□□□ -2.06
FOXN3O00409 RN7SKP223-201ENST00000410582 62 ntBASIC2.17□□□□□ -2.06
FOXN3O00409 RNA5SP100-201ENST00000410903 110 ntBASIC2.17□□□□□ -2.06
FOXN3O00409 RNA5SP59-201ENST00000410922 110 ntBASIC2.17□□□□□ -2.06
FOXN3O00409 AC104332.1-201ENST00000440471 797 ntBASIC2.17□□□□□ -2.06
FOXN3O00409 AC233266.1-201ENST00000454518 96 ntBASIC2.17□□□□□ -2.06
FOXN3O00409 COX6CP14-201ENST00000469580 174 ntBASIC2.17□□□□□ -2.06
FOXN3O00409 RNU6-1219P-201ENST00000516143 112 ntBASIC2.17□□□□□ -2.06
FOXN3O00409 SNORA31.17-201ENST00000516953 127 ntBASIC2.17□□□□□ -2.06
FOXN3O00409 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.17□□□□□ -2.06
FOXN3O00409 AC024995.1-201ENST00000523014 93 ntBASIC2.17□□□□□ -2.06
FOXN3O00409 AC104465.1-201ENST00000611365 139 ntBASIC2.17□□□□□ -2.06
FOXN3O00409 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.17□□□□□ -2.06
FOXN3O00409 AC242852.1-201ENST00000612151 96 ntBASIC2.17□□□□□ -2.06
FOXN3O00409 AL773524.1-201ENST00000614065 229 ntBASIC2.17□□□□□ -2.06
FOXN3O00409 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.17□□□□□ -2.06
FOXN3O00409 AC244015.1-201ENST00000622301 99 ntBASIC2.17□□□□□ -2.06
FOXN3O00409 MIR219B-201ENST00000637023 88 ntBASIC2.17□□□□□ -2.06
FOXN3O00409 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
FOXN3O00409 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.16□□□□□ -2.06
FOXN3O00409 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.16□□□□□ -2.06
FOXN3O00409 RNA5SP432-201ENST00000362480 116 ntBASIC2.16□□□□□ -2.06
FOXN3O00409 Y_RNA.180-201ENST00000363867 113 ntBASIC2.16□□□□□ -2.06
FOXN3O00409 Y_RNA.233-201ENST00000364407 101 ntBASIC2.16□□□□□ -2.06
FOXN3O00409 Y_RNA.304-201ENST00000365011 112 ntBASIC2.16□□□□□ -2.06
FOXN3O00409 SNORA72.4-201ENST00000384174 132 ntBASIC2.16□□□□□ -2.06
FOXN3O00409 Y_RNA.621-201ENST00000411065 96 ntBASIC2.16□□□□□ -2.06
FOXN3O00409 AL135786.1-201ENST00000415892 214 ntBASIC2.16□□□□□ -2.06
FOXN3O00409 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.16□□□□□ -2.06
FOXN3O00409 AL445646.1-201ENST00000431784 216 ntBASIC2.16□□□□□ -2.06
FOXN3O00409 HSPE1P21-201ENST00000438283 308 ntBASIC2.16□□□□□ -2.06
FOXN3O00409 AL606517.2-201ENST00000442855 241 ntBASIC2.16□□□□□ -2.06
FOXN3O00409 AC091021.1-201ENST00000468051 388 ntBASIC2.16□□□□□ -2.06
FOXN3O00409 RPL23AP63-201ENST00000498752 471 ntBASIC2.16□□□□□ -2.06
FOXN3O00409 RNA5SP437-201ENST00000517249 129 ntBASIC2.16□□□□□ -2.06
FOXN3O00409 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
FOXN3O00409 SNRPGP19-201ENST00000603826 189 ntBASIC2.16□□□□□ -2.06
FOXN3O00409 RNU2-4P-201ENST00000606190 192 ntBASIC2.16□□□□□ -2.06
FOXN3O00409 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
FOXN3O00409 Y_RNA.8-201ENST00000362353 102 ntBASIC2.15□□□□□ -2.07
FOXN3O00409 RNA5SP138-201ENST00000365098 114 ntBASIC2.15□□□□□ -2.07
FOXN3O00409 RNU6-117P-201ENST00000365415 107 ntBASIC2.15□□□□□ -2.07
FOXN3O00409 Y_RNA.368-201ENST00000365547 113 ntBASIC2.15□□□□□ -2.07
FOXN3O00409 RNU11-5P-201ENST00000391216 129 ntBASIC2.15□□□□□ -2.07
FOXN3O00409 RNA5SP425-201ENST00000410336 112 ntBASIC2.15□□□□□ -2.07
FOXN3O00409 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.15□□□□□ -2.07
FOXN3O00409 AC244636.1-201ENST00000421152 228 ntBASIC2.15□□□□□ -2.07
FOXN3O00409 AC069257.2-201ENST00000441819 155 ntBASIC2.15□□□□□ -2.07
FOXN3O00409 RPL36AP21-201ENST00000490372 323 ntBASIC2.15□□□□□ -2.07
FOXN3O00409 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.15□□□□□ -2.07
FOXN3O00409 RNU6-1291P-201ENST00000516591 104 ntBASIC2.15□□□□□ -2.07
FOXN3O00409 RNU6-255P-201ENST00000516957 105 ntBASIC2.15□□□□□ -2.07
FOXN3O00409 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.15□□□□□ -2.07
FOXN3O00409 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
FOXN3O00409 U8.2-201ENST00000363156 134 ntBASIC2.14□□□□□ -2.07
FOXN3O00409 Y_RNA.310-201ENST00000365063 113 ntBASIC2.14□□□□□ -2.07
FOXN3O00409 SNORA4.2-201ENST00000365313 147 ntBASIC2.14□□□□□ -2.07
FOXN3O00409 RNA5SP212-201ENST00000391223 107 ntBASIC2.14□□□□□ -2.07
FOXN3O00409 RNU4-61P-201ENST00000411243 107 ntBASIC2.14□□□□□ -2.07
FOXN3O00409 AC245047.3-201ENST00000429428 127 ntBASIC2.14□□□□□ -2.07
FOXN3O00409 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
FOXN3O00409 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC2.14□□□□□ -2.07
FOXN3O00409 RNU7-141P-201ENST00000459304 62 ntBASIC2.14□□□□□ -2.07
FOXN3O00409 AC117454.1-201ENST00000491120 168 ntBASIC2.14□□□□□ -2.07
FOXN3O00409 AC136628.3-201ENST00000521868 290 ntBASIC2.14□□□□□ -2.07
FOXN3O00409 AC100767.1-201ENST00000528178 123 ntBASIC2.14□□□□□ -2.07
FOXN3O00409 MIR5692C2-201ENST00000577959 77 ntBASIC2.14□□□□□ -2.07
FOXN3O00409 MIR4448-201ENST00000584360 86 ntBASIC2.14□□□□□ -2.07
FOXN3O00409 AC072026.1-201ENST00000605023 201 ntBASIC2.14□□□□□ -2.07
FOXN3O00409 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.14□□□□□ -2.07
FOXN3O00409 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.14□□□□□ -2.07
FOXN3O00409 AC013791.1-201ENST00000616619 62 ntBASIC2.14□□□□□ -2.07
FOXN3O00409 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.14□□□□□ -2.07
FOXN3O00409 MIR6079-201ENST00000635807 62 ntBASIC2.14□□□□□ -2.07
FOXN3O00409 AC068647.2-201ENST00000637380 353 ntBASIC2.14□□□□□ -2.07
FOXN3O00409 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
FOXN3O00409 AC018630.2-201ENST00000534866 2403 ntBASIC2.13□□□□□ -2.07
FOXN3O00409 RNU4-17P-201ENST00000365598 141 ntBASIC2.13□□□□□ -2.07
FOXN3O00409 Y_RNA.456-201ENST00000384232 111 ntBASIC2.13□□□□□ -2.07
FOXN3O00409 MIR548M-201ENST00000408260 86 ntBASIC2.13□□□□□ -2.07
FOXN3O00409 HSPE1P9-201ENST00000440046 311 ntBASIC2.13□□□□□ -2.07
FOXN3O00409 RPS20P10-201ENST00000451209 253 ntBASIC2.13□□□□□ -2.07
FOXN3O00409 RNU7-34P-201ENST00000459394 64 ntBASIC2.13□□□□□ -2.07
FOXN3O00409 RPS26P45-201ENST00000471748 340 ntBASIC2.13□□□□□ -2.07
FOXN3O00409 Y_RNA.662-201ENST00000516028 97 ntBASIC2.13□□□□□ -2.07
FOXN3O00409 AC021753.1-201ENST00000635724 168 ntBASIC2.13□□□□□ -2.07
FOXN3O00409 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
FOXN3O00409 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.13□□□□□ -2.07
FOXN3O00409 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms