Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.11□□□□□ -2.23
VPS54Q9P1Q0 AC006600.1-201ENST00000572529 153 ntBASIC1.11□□□□□ -2.23
VPS54Q9P1Q0 GHRLOS.1-201ENST00000610995 70 ntBASIC1.11□□□□□ -2.23
VPS54Q9P1Q0 AC104985.2-201ENST00000620598 500 ntBASIC1.11□□□□□ -2.23
VPS54Q9P1Q0 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.11□□□□□ -2.23
VPS54Q9P1Q0 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.1□□□□□ -2.23
VPS54Q9P1Q0 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.1□□□□□ -2.23
VPS54Q9P1Q0 Y_RNA.27-201ENST00000362540 103 ntBASIC1.1□□□□□ -2.23
VPS54Q9P1Q0 Y_RNA.428-201ENST00000384078 102 ntBASIC1.1□□□□□ -2.23
VPS54Q9P1Q0 SNORA25-201ENST00000384384 134 ntBASIC1.1□□□□□ -2.23
VPS54Q9P1Q0 MTCO2P27-201ENST00000420740 428 ntBASIC1.1□□□□□ -2.23
VPS54Q9P1Q0 AC104332.1-201ENST00000440471 797 ntBASIC1.1□□□□□ -2.23
VPS54Q9P1Q0 HSPE1P13-201ENST00000451143 297 ntBASIC1.1□□□□□ -2.23
VPS54Q9P1Q0 SNORA70.12-201ENST00000516084 153 ntBASIC1.1□□□□□ -2.23
VPS54Q9P1Q0 RNU6-155P-201ENST00000516347 100 ntBASIC1.1□□□□□ -2.23
VPS54Q9P1Q0 RNU6-911P-201ENST00000516523 104 ntBASIC1.1□□□□□ -2.23
VPS54Q9P1Q0 SNORD116.3-201ENST00000517176 78 ntBASIC1.1□□□□□ -2.23
VPS54Q9P1Q0 AL358944.1-201ENST00000528537 144 ntBASIC1.1□□□□□ -2.23
VPS54Q9P1Q0 VN1R91P-201ENST00000594377 169 ntBASIC1.1□□□□□ -2.23
VPS54Q9P1Q0 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.1□□□□□ -2.23
VPS54Q9P1Q0 MIR6767-201ENST00000637302 66 ntBASIC1.1□□□□□ -2.23
VPS54Q9P1Q0 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
VPS54Q9P1Q0 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.09□□□□□ -2.23
VPS54Q9P1Q0 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.09□□□□□ -2.23
VPS54Q9P1Q0 Y_RNA.58-201ENST00000362807 102 ntBASIC1.09□□□□□ -2.23
VPS54Q9P1Q0 SNORD68-201ENST00000363214 84 ntBASIC1.09□□□□□ -2.23
VPS54Q9P1Q0 Y_RNA.154-201ENST00000363624 102 ntBASIC1.09□□□□□ -2.23
VPS54Q9P1Q0 RNY3P1-201ENST00000365085 102 ntBASIC1.09□□□□□ -2.23
VPS54Q9P1Q0 SNORA2.2-201ENST00000365473 135 ntBASIC1.09□□□□□ -2.23
VPS54Q9P1Q0 RNY3-201ENST00000365484 102 ntBASIC1.09□□□□□ -2.23
VPS54Q9P1Q0 SNORA70.7-201ENST00000384159 133 ntBASIC1.09□□□□□ -2.23
VPS54Q9P1Q0 Y_RNA.496-201ENST00000384444 101 ntBASIC1.09□□□□□ -2.23
VPS54Q9P1Q0 SNORD19B-201ENST00000459623 84 ntBASIC1.09□□□□□ -2.23
VPS54Q9P1Q0 RPS23P4-201ENST00000487908 423 ntBASIC1.09□□□□□ -2.23
VPS54Q9P1Q0 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.09□□□□□ -2.23
VPS54Q9P1Q0 Y_RNA.661-201ENST00000516003 99 ntBASIC1.09□□□□□ -2.23
VPS54Q9P1Q0 RNA5SP102-201ENST00000516865 106 ntBASIC1.09□□□□□ -2.23
VPS54Q9P1Q0 RNA5SP404-201ENST00000517118 132 ntBASIC1.09□□□□□ -2.23
VPS54Q9P1Q0 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.09□□□□□ -2.23
VPS54Q9P1Q0 RBM11P1-201ENST00000604951 799 ntBASIC1.09□□□□□ -2.23
VPS54Q9P1Q0 AL022345.2-201ENST00000606307 135 ntBASIC1.09□□□□□ -2.23
VPS54Q9P1Q0 BX284668.6-201ENST00000606899 438 ntBASIC1.09□□□□□ -2.23
VPS54Q9P1Q0 Y_RNA.70-201ENST00000362886 110 ntBASIC1.08□□□□□ -2.24
VPS54Q9P1Q0 RNU6-1009P-201ENST00000390996 107 ntBASIC1.08□□□□□ -2.24
VPS54Q9P1Q0 AL451046.2-201ENST00000403074 277 ntBASIC1.08□□□□□ -2.24
VPS54Q9P1Q0 RNU2-61P-201ENST00000411069 191 ntBASIC1.08□□□□□ -2.24
VPS54Q9P1Q0 PIGPP3-201ENST00000425307 415 ntBASIC1.08□□□□□ -2.24
VPS54Q9P1Q0 AC048334.1-201ENST00000477975 159 ntBASIC1.08□□□□□ -2.24
VPS54Q9P1Q0 AC103810.9-201ENST00000606688 112 ntBASIC1.08□□□□□ -2.24
VPS54Q9P1Q0 MIR4272-201ENST00000635924 64 ntBASIC1.08□□□□□ -2.24
VPS54Q9P1Q0 AC112487.2-201ENST00000637950 304 ntBASIC1.08□□□□□ -2.24
VPS54Q9P1Q0 Y_RNA.146-201ENST00000363549 102 ntBASIC1.07□□□□□ -2.24
VPS54Q9P1Q0 Y_RNA.263-201ENST00000364659 114 ntBASIC1.07□□□□□ -2.24
VPS54Q9P1Q0 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.07□□□□□ -2.24
VPS54Q9P1Q0 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC1.07□□□□□ -2.24
VPS54Q9P1Q0 MTND5P20-201ENST00000448677 143 ntBASIC1.07□□□□□ -2.24
VPS54Q9P1Q0 RNU7-152P-201ENST00000458982 64 ntBASIC1.07□□□□□ -2.24
VPS54Q9P1Q0 SNORA25.10-201ENST00000515926 124 ntBASIC1.07□□□□□ -2.24
VPS54Q9P1Q0 RNU6-322P-201ENST00000516010 103 ntBASIC1.07□□□□□ -2.24
VPS54Q9P1Q0 SNORA31.2-201ENST00000516019 134 ntBASIC1.07□□□□□ -2.24
VPS54Q9P1Q0 SNORA70.22-201ENST00000517160 124 ntBASIC1.07□□□□□ -2.24
VPS54Q9P1Q0 AC011604.1-201ENST00000545978 196 ntBASIC1.07□□□□□ -2.24
VPS54Q9P1Q0 MIR548S-201ENST00000581352 82 ntBASIC1.07□□□□□ -2.24
VPS54Q9P1Q0 AC092447.9-201ENST00000603395 144 ntBASIC1.07□□□□□ -2.24
VPS54Q9P1Q0 AC022441.3-201ENST00000605737 136 ntBASIC1.07□□□□□ -2.24
VPS54Q9P1Q0 AL591926.4-201ENST00000616895 298 ntBASIC1.07□□□□□ -2.24
VPS54Q9P1Q0 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
VPS54Q9P1Q0 Y_RNA.80-201ENST00000362996 102 ntBASIC1.06□□□□□ -2.24
VPS54Q9P1Q0 RNU6-1175P-201ENST00000365200 107 ntBASIC1.06□□□□□ -2.24
VPS54Q9P1Q0 Y_RNA.329-201ENST00000365209 107 ntBASIC1.06□□□□□ -2.24
VPS54Q9P1Q0 Y_RNA.485-201ENST00000384395 102 ntBASIC1.06□□□□□ -2.24
VPS54Q9P1Q0 RNU6-163P-201ENST00000384396 106 ntBASIC1.06□□□□□ -2.24
VPS54Q9P1Q0 MIR526A1-201ENST00000384897 85 ntBASIC1.06□□□□□ -2.24
VPS54Q9P1Q0 MIR222-201ENST00000384992 110 ntBASIC1.06□□□□□ -2.24
VPS54Q9P1Q0 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.06□□□□□ -2.24
VPS54Q9P1Q0 AC114811.1-201ENST00000507207 168 ntBASIC1.06□□□□□ -2.24
VPS54Q9P1Q0 MIR4801-201ENST00000582704 82 ntBASIC1.06□□□□□ -2.24
VPS54Q9P1Q0 FAM106DP-201ENST00000586416 501 ntBASIC1.06□□□□□ -2.24
VPS54Q9P1Q0 AC004832.4-201ENST00000608952 331 ntBASIC1.06□□□□□ -2.24
VPS54Q9P1Q0 AC091925.1-201ENST00000623204 462 ntBASIC1.06□□□□□ -2.24
VPS54Q9P1Q0 AC027335.2-201ENST00000624030 375 ntBASIC1.06□□□□□ -2.24
VPS54Q9P1Q0 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.06□□□□□ -2.24
VPS54Q9P1Q0 Y_RNA.5-201ENST00000362334 102 ntBASIC1.05□□□□□ -2.24
VPS54Q9P1Q0 RNU6-1115P-201ENST00000362490 106 ntBASIC1.05□□□□□ -2.24
VPS54Q9P1Q0 Y_RNA.230-201ENST00000364348 109 ntBASIC1.05□□□□□ -2.24
VPS54Q9P1Q0 RNY3P14-201ENST00000384309 102 ntBASIC1.05□□□□□ -2.24
VPS54Q9P1Q0 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.05□□□□□ -2.24
VPS54Q9P1Q0 RNU6-910P-201ENST00000390844 107 ntBASIC1.05□□□□□ -2.24
VPS54Q9P1Q0 MIR891A-201ENST00000401237 79 ntBASIC1.05□□□□□ -2.24
VPS54Q9P1Q0 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.05□□□□□ -2.24
VPS54Q9P1Q0 RNU4-77P-201ENST00000516692 156 ntBASIC1.05□□□□□ -2.24
VPS54Q9P1Q0 RN7SKP295-201ENST00000517264 153 ntBASIC1.05□□□□□ -2.24
VPS54Q9P1Q0 AC120024.3-201ENST00000603167 156 ntBASIC1.05□□□□□ -2.24
VPS54Q9P1Q0 HSPE1P19-201ENST00000603327 295 ntBASIC1.05□□□□□ -2.24
VPS54Q9P1Q0 MIR8070-201ENST00000616510 88 ntBASIC1.05□□□□□ -2.24
VPS54Q9P1Q0 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
VPS54Q9P1Q0 RNU6-833P-201ENST00000363486 107 ntBASIC1.04□□□□□ -2.24
VPS54Q9P1Q0 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.04□□□□□ -2.24
VPS54Q9P1Q0 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.04□□□□□ -2.24
VPS54Q9P1Q0 RNU6-1054P-201ENST00000411293 104 ntBASIC1.04□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms