Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 AC011476.5-201ENST00000615594 130 ntBASIC0.63□□□□□ -2.31
EXOSC4Q9NPD3 SNORA25.3-201ENST00000363205 127 ntBASIC0.62□□□□□ -2.31
EXOSC4Q9NPD3 Y_RNA.336-201ENST00000365307 109 ntBASIC0.62□□□□□ -2.31
EXOSC4Q9NPD3 Y_RNA.361-201ENST00000365515 120 ntBASIC0.62□□□□□ -2.31
EXOSC4Q9NPD3 RNU6-708P-201ENST00000384217 107 ntBASIC0.62□□□□□ -2.31
EXOSC4Q9NPD3 MIR942-201ENST00000401111 86 ntBASIC0.62□□□□□ -2.31
EXOSC4Q9NPD3 AL031003.1-201ENST00000404229 172 ntBASIC0.62□□□□□ -2.31
EXOSC4Q9NPD3 AL390729.2-201ENST00000416137 156 ntBASIC0.62□□□□□ -2.31
EXOSC4Q9NPD3 AC004941.2-201ENST00000427009 228 ntBASIC0.62□□□□□ -2.31
EXOSC4Q9NPD3 CYCTP-201ENST00000504253 315 ntBASIC0.62□□□□□ -2.31
EXOSC4Q9NPD3 RNU6-307P-201ENST00000516743 106 ntBASIC0.62□□□□□ -2.31
EXOSC4Q9NPD3 RNA5SP102-201ENST00000516865 106 ntBASIC0.62□□□□□ -2.31
EXOSC4Q9NPD3 RNU6-264P-201ENST00000517134 104 ntBASIC0.62□□□□□ -2.31
EXOSC4Q9NPD3 AC136628.3-201ENST00000521868 290 ntBASIC0.62□□□□□ -2.31
EXOSC4Q9NPD3 AC011604.1-201ENST00000545978 196 ntBASIC0.62□□□□□ -2.31
EXOSC4Q9NPD3 AL391903.3-201ENST00000612158 163 ntBASIC0.62□□□□□ -2.31
EXOSC4Q9NPD3 AC098679.4-201ENST00000624241 654 ntBASIC0.62□□□□□ -2.31
EXOSC4Q9NPD3 RNU6-1188P-201ENST00000363795 107 ntBASIC0.61□□□□□ -2.31
EXOSC4Q9NPD3 RNU6-324P-201ENST00000363957 106 ntBASIC0.61□□□□□ -2.31
EXOSC4Q9NPD3 Y_RNA.330-201ENST00000365230 109 ntBASIC0.61□□□□□ -2.31
EXOSC4Q9NPD3 RNU6-20P-201ENST00000384106 107 ntBASIC0.61□□□□□ -2.31
EXOSC4Q9NPD3 Y_RNA.577-201ENST00000384794 101 ntBASIC0.61□□□□□ -2.31
EXOSC4Q9NPD3 MIR625-201ENST00000385047 85 ntBASIC0.61□□□□□ -2.31
EXOSC4Q9NPD3 RNU6-876P-201ENST00000391295 104 ntBASIC0.61□□□□□ -2.31
EXOSC4Q9NPD3 RNU6-1199P-201ENST00000411249 104 ntBASIC0.61□□□□□ -2.31
EXOSC4Q9NPD3 RPS3AP1-201ENST00000413190 320 ntBASIC0.61□□□□□ -2.31
EXOSC4Q9NPD3 MRPS18CP6-201ENST00000423587 223 ntBASIC0.61□□□□□ -2.31
EXOSC4Q9NPD3 AC096644.2-201ENST00000429278 159 ntBASIC0.61□□□□□ -2.31
EXOSC4Q9NPD3 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.61□□□□□ -2.31
EXOSC4Q9NPD3 SUMO1P2-201ENST00000452524 304 ntBASIC0.61□□□□□ -2.31
EXOSC4Q9NPD3 AC245047.8-201ENST00000456455 284 ntBASIC0.61□□□□□ -2.31
EXOSC4Q9NPD3 AC006380.1-201ENST00000603598 186 ntBASIC0.61□□□□□ -2.31
EXOSC4Q9NPD3 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC0.61□□□□□ -2.31
EXOSC4Q9NPD3 SNORD114-7-201ENST00000362520 77 ntBASIC0.6□□□□□ -2.31
EXOSC4Q9NPD3 RNU6-626P-201ENST00000363354 107 ntBASIC0.6□□□□□ -2.31
EXOSC4Q9NPD3 Y_RNA.279-201ENST00000364763 95 ntBASIC0.6□□□□□ -2.31
EXOSC4Q9NPD3 SNORD81.2-201ENST00000365153 76 ntBASIC0.6□□□□□ -2.31
EXOSC4Q9NPD3 RNU6-890P-201ENST00000384121 107 ntBASIC0.6□□□□□ -2.31
EXOSC4Q9NPD3 MIR200A-201ENST00000384875 90 ntBASIC0.6□□□□□ -2.31
EXOSC4Q9NPD3 SNORA75.6-201ENST00000391318 127 ntBASIC0.6□□□□□ -2.31
EXOSC4Q9NPD3 RPS26P5-201ENST00000418544 335 ntBASIC0.6□□□□□ -2.31
EXOSC4Q9NPD3 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.6□□□□□ -2.31
EXOSC4Q9NPD3 MTCO3P10-201ENST00000455912 772 ntBASIC0.6□□□□□ -2.31
EXOSC4Q9NPD3 Y_RNA.635-201ENST00000459041 101 ntBASIC0.6□□□□□ -2.31
EXOSC4Q9NPD3 RNU7-90P-201ENST00000459216 62 ntBASIC0.6□□□□□ -2.31
EXOSC4Q9NPD3 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.6□□□□□ -2.31
EXOSC4Q9NPD3 RNU6-1012P-201ENST00000516606 109 ntBASIC0.6□□□□□ -2.31
EXOSC4Q9NPD3 Y_RNA.691-201ENST00000516611 103 ntBASIC0.6□□□□□ -2.31
EXOSC4Q9NPD3 MIR2355-201ENST00000517199 87 ntBASIC0.6□□□□□ -2.31
EXOSC4Q9NPD3 MTND4LP26-201ENST00000518144 282 ntBASIC0.6□□□□□ -2.31
EXOSC4Q9NPD3 AC023827.1-201ENST00000569247 97 ntBASIC0.6□□□□□ -2.31
EXOSC4Q9NPD3 MIR4781-201ENST00000585250 76 ntBASIC0.6□□□□□ -2.31
EXOSC4Q9NPD3 AC240442.1-201ENST00000616055 283 ntBASIC0.6□□□□□ -2.31
EXOSC4Q9NPD3 AC027279.3-201ENST00000625055 122 ntBASIC0.6□□□□□ -2.31
EXOSC4Q9NPD3 TPTEP1-208ENST00000636884 213 ntBASIC0.6□□□□□ -2.31
EXOSC4Q9NPD3 MIR6767-201ENST00000637302 66 ntBASIC0.6□□□□□ -2.31
EXOSC4Q9NPD3 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.6□□□□□ -2.31
EXOSC4Q9NPD3 HSBP1P2-201ENST00000299671 229 ntBASIC0.59□□□□□ -2.31
EXOSC4Q9NPD3 MIR373-201ENST00000362273 69 ntBASIC0.59□□□□□ -2.31
EXOSC4Q9NPD3 RNA5SP264-201ENST00000363115 107 ntBASIC0.59□□□□□ -2.31
EXOSC4Q9NPD3 Y_RNA.446-201ENST00000384178 104 ntBASIC0.59□□□□□ -2.31
EXOSC4Q9NPD3 RNU6-1105P-201ENST00000384774 107 ntBASIC0.59□□□□□ -2.31
EXOSC4Q9NPD3 MT-TL1-201ENST00000386347 75 ntBASIC0.59□□□□□ -2.31
EXOSC4Q9NPD3 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.59□□□□□ -2.31
EXOSC4Q9NPD3 RNU2-54P-201ENST00000410299 190 ntBASIC0.59□□□□□ -2.31
EXOSC4Q9NPD3 Y_RNA.605-201ENST00000410577 105 ntBASIC0.59□□□□□ -2.31
EXOSC4Q9NPD3 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.59□□□□□ -2.31
EXOSC4Q9NPD3 RNU7-41P-201ENST00000515917 61 ntBASIC0.59□□□□□ -2.31
EXOSC4Q9NPD3 RNU6-470P-201ENST00000515954 104 ntBASIC0.59□□□□□ -2.31
EXOSC4Q9NPD3 RNU6-436P-201ENST00000516171 114 ntBASIC0.59□□□□□ -2.31
EXOSC4Q9NPD3 SNORA18.7-201ENST00000516910 131 ntBASIC0.59□□□□□ -2.31
EXOSC4Q9NPD3 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.59□□□□□ -2.31
EXOSC4Q9NPD3 AC004817.2-201ENST00000561794 651 ntBASIC0.59□□□□□ -2.31
EXOSC4Q9NPD3 AC005176.2-201ENST00000596933 147 ntBASIC0.59□□□□□ -2.31
EXOSC4Q9NPD3 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.59□□□□□ -2.31
EXOSC4Q9NPD3 WT1-AS_8.1-201ENST00000615200 275 ntBASIC0.59□□□□□ -2.31
EXOSC4Q9NPD3 MIR6835-201ENST00000621552 64 ntBASIC0.59□□□□□ -2.31
EXOSC4Q9NPD3 RNU6-1084P-201ENST00000362498 107 ntBASIC0.58□□□□□ -2.32
EXOSC4Q9NPD3 Y_RNA.253-201ENST00000364562 112 ntBASIC0.58□□□□□ -2.32
EXOSC4Q9NPD3 RNU6-1335P-201ENST00000365426 107 ntBASIC0.58□□□□□ -2.32
EXOSC4Q9NPD3 MIR520C-201ENST00000385005 87 ntBASIC0.58□□□□□ -2.32
EXOSC4Q9NPD3 MIR452-201ENST00000385020 85 ntBASIC0.58□□□□□ -2.32
EXOSC4Q9NPD3 MIR522-201ENST00000385071 87 ntBASIC0.58□□□□□ -2.32
EXOSC4Q9NPD3 RNU6-192P-201ENST00000391253 100 ntBASIC0.58□□□□□ -2.32
EXOSC4Q9NPD3 RNU2-61P-201ENST00000411069 191 ntBASIC0.58□□□□□ -2.32
EXOSC4Q9NPD3 FGF7P6-202ENST00000451282 293 ntBASIC0.58□□□□□ -2.32
EXOSC4Q9NPD3 SNORA70.12-201ENST00000516084 153 ntBASIC0.58□□□□□ -2.32
EXOSC4Q9NPD3 RNU6-155P-201ENST00000516347 100 ntBASIC0.58□□□□□ -2.32
EXOSC4Q9NPD3 RNA5SP255-201ENST00000516370 107 ntBASIC0.58□□□□□ -2.32
EXOSC4Q9NPD3 MIR4659A-201ENST00000580269 81 ntBASIC0.58□□□□□ -2.32
EXOSC4Q9NPD3 AC139792.2-201ENST00000624218 587 ntBASIC0.58□□□□□ -2.32
EXOSC4Q9NPD3 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.57□□□□□ -2.32
EXOSC4Q9NPD3 MIR96-201ENST00000362288 78 ntBASIC0.57□□□□□ -2.32
EXOSC4Q9NPD3 Y_RNA.248-201ENST00000364501 109 ntBASIC0.57□□□□□ -2.32
EXOSC4Q9NPD3 U8.5-201ENST00000364528 136 ntBASIC0.57□□□□□ -2.32
EXOSC4Q9NPD3 SNORD50B-201ENST00000364995 70 ntBASIC0.57□□□□□ -2.32
EXOSC4Q9NPD3 Y_RNA.314-201ENST00000365114 102 ntBASIC0.57□□□□□ -2.32
EXOSC4Q9NPD3 RNU6-1297P-201ENST00000384415 104 ntBASIC0.57□□□□□ -2.32
EXOSC4Q9NPD3 MIR92A1-201ENST00000385233 78 ntBASIC0.57□□□□□ -2.32
EXOSC4Q9NPD3 MIR1185-1-201ENST00000408598 86 ntBASIC0.57□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 120.5 ms