Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 RNU6-1105P-201ENST00000384774 107 ntBASIC0.91□□□□□ -2.26
RPUSD4Q96CM3 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC0.91□□□□□ -2.26
RPUSD4Q96CM3 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.91□□□□□ -2.26
RPUSD4Q96CM3 AL160004.2-201ENST00000432935 350 ntBASIC0.91□□□□□ -2.26
RPUSD4Q96CM3 AC009474.2-201ENST00000451383 136 ntBASIC0.91□□□□□ -2.26
RPUSD4Q96CM3 AL117351.2-201ENST00000513571 157 ntBASIC0.91□□□□□ -2.26
RPUSD4Q96CM3 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
RPUSD4Q96CM3 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.91□□□□□ -2.26
RPUSD4Q96CM3 MIR4778-201ENST00000577635 80 ntBASIC0.91□□□□□ -2.26
RPUSD4Q96CM3 MIR3660-201ENST00000584845 100 ntBASIC0.91□□□□□ -2.26
RPUSD4Q96CM3 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.91□□□□□ -2.26
RPUSD4Q96CM3 AL357312.1-201ENST00000603879 298 ntBASIC0.91□□□□□ -2.26
RPUSD4Q96CM3 AC005972.2-201ENST00000604690 348 ntBASIC0.91□□□□□ -2.26
RPUSD4Q96CM3 AL133255.1-201ENST00000606374 441 ntBASIC0.91□□□□□ -2.26
RPUSD4Q96CM3 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
RPUSD4Q96CM3 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.91□□□□□ -2.26
RPUSD4Q96CM3 RNA5SP327-201ENST00000362494 101 ntBASIC0.9□□□□□ -2.27
RPUSD4Q96CM3 Y_RNA.368-201ENST00000365547 113 ntBASIC0.9□□□□□ -2.27
RPUSD4Q96CM3 RNU6-1323P-201ENST00000384025 107 ntBASIC0.9□□□□□ -2.27
RPUSD4Q96CM3 SNORA72-201ENST00000384339 132 ntBASIC0.9□□□□□ -2.27
RPUSD4Q96CM3 RNY1P14-201ENST00000384426 108 ntBASIC0.9□□□□□ -2.27
RPUSD4Q96CM3 MIR891A-201ENST00000401237 79 ntBASIC0.9□□□□□ -2.27
RPUSD4Q96CM3 AL451046.2-201ENST00000403074 277 ntBASIC0.9□□□□□ -2.27
RPUSD4Q96CM3 MIR1302-11-201ENST00000408051 138 ntBASIC0.9□□□□□ -2.27
RPUSD4Q96CM3 MIR1302-9-201ENST00000408365 138 ntBASIC0.9□□□□□ -2.27
RPUSD4Q96CM3 MIR1302-10-201ENST00000408734 138 ntBASIC0.9□□□□□ -2.27
RPUSD4Q96CM3 RPL23AP36-201ENST00000413895 458 ntBASIC0.9□□□□□ -2.27
RPUSD4Q96CM3 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC0.9□□□□□ -2.27
RPUSD4Q96CM3 DYNLT3P2-201ENST00000442517 295 ntBASIC0.9□□□□□ -2.27
RPUSD4Q96CM3 RPS20P10-201ENST00000451209 253 ntBASIC0.9□□□□□ -2.27
RPUSD4Q96CM3 AC233266.1-201ENST00000454518 96 ntBASIC0.9□□□□□ -2.27
RPUSD4Q96CM3 Y_RNA.639-201ENST00000458981 102 ntBASIC0.9□□□□□ -2.27
RPUSD4Q96CM3 RNU7-12P-201ENST00000516030 62 ntBASIC0.9□□□□□ -2.27
RPUSD4Q96CM3 AC011604.1-201ENST00000545978 196 ntBASIC0.9□□□□□ -2.27
RPUSD4Q96CM3 AC120024.3-201ENST00000603167 156 ntBASIC0.9□□□□□ -2.27
RPUSD4Q96CM3 AL080274.1-201ENST00000605565 220 ntBASIC0.9□□□□□ -2.27
RPUSD4Q96CM3 MIR1302-2-201ENST00000607096 138 ntBASIC0.9□□□□□ -2.27
RPUSD4Q96CM3 AC242852.1-201ENST00000612151 96 ntBASIC0.9□□□□□ -2.27
RPUSD4Q96CM3 AC244015.1-201ENST00000622301 99 ntBASIC0.9□□□□□ -2.27
RPUSD4Q96CM3 AC027335.2-201ENST00000624030 375 ntBASIC0.9□□□□□ -2.27
RPUSD4Q96CM3 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC0.9□□□□□ -2.27
RPUSD4Q96CM3 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.89□□□□□ -2.27
RPUSD4Q96CM3 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.89□□□□□ -2.27
RPUSD4Q96CM3 SNORD81.1-201ENST00000363064 77 ntBASIC0.89□□□□□ -2.27
RPUSD4Q96CM3 SNORA7.1-201ENST00000363750 139 ntBASIC0.89□□□□□ -2.27
RPUSD4Q96CM3 Y_RNA.172-201ENST00000363765 102 ntBASIC0.89□□□□□ -2.27
RPUSD4Q96CM3 RNU1-124P-201ENST00000363861 145 ntBASIC0.89□□□□□ -2.27
RPUSD4Q96CM3 SNORD42.2-201ENST00000365570 69 ntBASIC0.89□□□□□ -2.27
RPUSD4Q96CM3 Y_RNA.431-201ENST00000384086 102 ntBASIC0.89□□□□□ -2.27
RPUSD4Q96CM3 Y_RNA.456-201ENST00000384232 111 ntBASIC0.89□□□□□ -2.27
RPUSD4Q96CM3 SNORD12-201ENST00000391002 90 ntBASIC0.89□□□□□ -2.27
RPUSD4Q96CM3 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC0.89□□□□□ -2.27
RPUSD4Q96CM3 AL133373.1-201ENST00000497098 94 ntBASIC0.89□□□□□ -2.27
RPUSD4Q96CM3 SNORA25.10-201ENST00000515926 124 ntBASIC0.89□□□□□ -2.27
RPUSD4Q96CM3 RNU6-922P-201ENST00000516753 99 ntBASIC0.89□□□□□ -2.27
RPUSD4Q96CM3 MIR4795-201ENST00000584182 89 ntBASIC0.89□□□□□ -2.27
RPUSD4Q96CM3 RPS29P30-201ENST00000600975 111 ntBASIC0.89□□□□□ -2.27
RPUSD4Q96CM3 AL591926.4-201ENST00000616895 298 ntBASIC0.89□□□□□ -2.27
RPUSD4Q96CM3 uc_338.22-201ENST00000622722 187 ntBASIC0.89□□□□□ -2.27
RPUSD4Q96CM3 AC106754.2-201ENST00000623006 233 ntBASIC0.89□□□□□ -2.27
RPUSD4Q96CM3 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 Y_RNA.58-201ENST00000362807 102 ntBASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 Y_RNA.154-201ENST00000363624 102 ntBASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 RNU4-50P-201ENST00000364361 141 ntBASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 Y_RNA.310-201ENST00000365063 113 ntBASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 RNY3P1-201ENST00000365085 102 ntBASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 Y_RNA.329-201ENST00000365209 107 ntBASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 RNY3-201ENST00000365484 102 ntBASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 SNORA25-201ENST00000384384 134 ntBASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 Y_RNA.551-201ENST00000384661 102 ntBASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 RNU6-136P-201ENST00000384663 107 ntBASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 MIR19B1-201ENST00000384829 87 ntBASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 Y_RNA.579-201ENST00000390939 94 ntBASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 RNU4-62P-201ENST00000410125 130 ntBASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 AC245047.7-201ENST00000440265 293 ntBASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 RPEP5-201ENST00000441137 268 ntBASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 U8.20-201ENST00000459445 131 ntBASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 SNORA31.4-201ENST00000516049 129 ntBASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 RNU7-116P-201ENST00000516940 62 ntBASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 AL022345.2-201ENST00000606307 135 ntBASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 AC103810.9-201ENST00000606688 112 ntBASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 AC068647.2-201ENST00000637380 353 ntBASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
RPUSD4Q96CM3 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
RPUSD4Q96CM3 RNU6-324P-201ENST00000363957 106 ntBASIC0.87□□□□□ -2.27
RPUSD4Q96CM3 Y_RNA.253-201ENST00000364562 112 ntBASIC0.87□□□□□ -2.27
RPUSD4Q96CM3 RNU6-1187P-201ENST00000364771 110 ntBASIC0.87□□□□□ -2.27
RPUSD4Q96CM3 Y_RNA.336-201ENST00000365307 109 ntBASIC0.87□□□□□ -2.27
RPUSD4Q96CM3 AC117470.1-201ENST00000381974 330 ntBASIC0.87□□□□□ -2.27
RPUSD4Q96CM3 RNU6-1080P-201ENST00000383982 107 ntBASIC0.87□□□□□ -2.27
RPUSD4Q96CM3 Y_RNA.439-201ENST00000384119 94 ntBASIC0.87□□□□□ -2.27
RPUSD4Q96CM3 MIR526A1-201ENST00000384897 85 ntBASIC0.87□□□□□ -2.27
RPUSD4Q96CM3 MIR452-201ENST00000385020 85 ntBASIC0.87□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 179.4 ms